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For sure median_otsu, but I think it will be better to go through the whole list of changed functions and just check if they are used anywhere. Although it's mostly streamlines-related functions, which makes the job much easier as they are never used in dmipy.
For the records, one case in which median_otsu is used is discussed in #76 .
With the recent update of dipy, many functions will not work.
There are two possible solutions:
What do we do @rutgerfick ?
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