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This repository has been archived by the owner on Jul 18, 2024. It is now read-only.
I'm not sure if this is a feature request or a bug report. That answer is contingent on whether anonymous (non-SAS) access to Azure Storage blobs is supported.
Describe Preferred Solution
Use the following command line: blobxfer download --storage-url "https://dragentestdata.blob.core.windows.net/reference-genomes/Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar" --local-path "/cromwell-executions/PairedFastqToVcf/b1ec8b8f-8f6b-4190-b87c-57ff65782d87/call-DRAGEN/inputs/dragentestdata.blob.core.windows.net/reference-genomes/Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar" --chunk-size-bytes 104857600 --rename --include 'Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar'
Expected result: Successful download of the tar file (note that the url works in Edge and other browsers without any issues)
Actual result:
No file downloaded
Error (non-zero) return code
The following STDERR:
Traceback (most recent call last):
File "/usr/local/bin/blobxfer", line 33, in
sys.exit(load_entry_point('blobxfer==1.11.0', 'console_scripts', 'blobxfer')())
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1137, in call
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1062, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1668, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 763, in invoke
return __callback(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/decorators.py", line 84, in new_func
return ctx.invoke(f, obj, *args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/click/core.py", line 763, in invoke
return __callback(*args, **kwargs)
File "/usr/local/lib/python3.9/site-packages/blobxfer-1.11.0-py3.9.egg/blobxfer_cli/cli.py", line 1094, in download
ctx.initialize(settings.TransferAction.Download)
File "/usr/local/lib/python3.9/site-packages/blobxfer-1.11.0-py3.9.egg/blobxfer_cli/cli.py", line 71, in initialize
self.credentials = settings.create_azure_storage_credentials(
File "/usr/local/lib/python3.9/site-packages/blobxfer-1.11.0-py3.9.egg/blobxfer_cli/settings.py", line 425, in create_azure_storage_credentials
creds.add_storage_account(name, key, endpoint)
File "/usr/local/lib/python3.9/site-packages/blobxfer-1.11.0-py3.9.egg/blobxfer/operations/azure/init.py", line 69, in add_storage_account
self._storage_accounts[name] = StorageAccount(
File "/usr/local/lib/python3.9/site-packages/blobxfer-1.11.0-py3.9.egg/blobxfer/operations/azure/init.py", line 106, in init
raise ValueError(
ValueError: no authentication credential given for storage account: dragentestdata
Public container downloads can be processed by other general tooling such as curl, wget, powershell or other generally available tooling. It is not currently supported in blobxfer and most likely will not be unless provided by the community. blobxfer focuses on authenticated workflows.
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Feature Request Description
I'm not sure if this is a feature request or a bug report. That answer is contingent on whether anonymous (non-SAS) access to Azure Storage blobs is supported.
Describe Preferred Solution
Use the following command line:
blobxfer download --storage-url "https://dragentestdata.blob.core.windows.net/reference-genomes/Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar" --local-path "/cromwell-executions/PairedFastqToVcf/b1ec8b8f-8f6b-4190-b87c-57ff65782d87/call-DRAGEN/inputs/dragentestdata.blob.core.windows.net/reference-genomes/Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar" --chunk-size-bytes 104857600 --rename --include 'Hsapiens/hash-tables/hg38_altaware_nohla-cnv-anchored.v8.tar'
Expected result: Successful download of the tar file (note that the url works in Edge and other browsers without any issues)
Actual result:
Describe Alternatives Considered
wget -O
Microsoft.Azure.Batch.ResourceFile.FromStorageContainerUrl()
Additional Context
This is running in the linux blobxfr container on a CentOS 7.
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