Fix: File share sample (#312)

* Fixed sample

* Removed unchanged file name

* removed account

* Removed custom script

Author: brnleehng

R/utility-job.R

@@ -499,7 +499,9 @@ waitForTasksToComplete <-
 
         for (i in 1:length(failedTasks$value)) {
           if (!is.null(failedTasks$value[[i]]$executionInfo$result) &&
-              failedTasks$value[[i]]$executionInfo$result == "Failure") {
+              grepl(failedTasks$value[[i]]$executionInfo$result,
+                    "failure",
+                    ignore.case = TRUE)) {
             tasksFailureWarningLabel <-
               paste0(tasksFailureWarningLabel,
                      sprintf("%s\n", failedTasks$value[[i]]$id))
@@ -557,7 +559,7 @@ waitForTasksToComplete <-
           next
         }
 
-        if (tolower(mergeTask$executionInfo$result) == "success") {
+        if (grepl(mergeTask$executionInfo$result, "success", ignore.case = TRUE)) {
           cat(" Completed.")
           break
         }
@@ -601,7 +603,9 @@ waitForJobPreparation <- function(jobId, poolId) {
     )
 
     statuses <- sapply(statuses$value, function(x) {
-      tolower(x$jobPreparationTaskExecutionInfo$result) == "success"
+      grepl(x$jobPreparationTaskExecutionInfo$result,
+            "success",
+            ignore.case = TRUE)
     })
 
     if (TRUE %in% statuses) {

samples/azure_files/azure_files_cluster.json

@@ -20,8 +20,6 @@
   },
   "commandLine": [
     "mkdir /mnt/batch/tasks/shared/data",
-    "mount -t cifs //<STORAGE_ACCOUNT_NAME>.file.core.windows.net/<FILE_SHARE_NAME> /mnt/batch/tasks/shared/data -o vers=3.0,username=<STORAGE_ACCOUNT_NAME>,password=<STORAGE_ACCOUNT_KEY>,dir_mode=0777,file_mode=0777,sec=ntlmssp",
-    "wget https://raw.githubusercontent.com/Azure/doAzureParallel/feature/custom-package/inst/startup/install_custom.R",
-    "docker run --rm -v $AZ_BATCH_NODE_ROOT_DIR:$AZ_BATCH_NODE_ROOT_DIR  -e AZ_BATCH_NODE_ROOT_DIR=$AZ_BATCH_NODE_ROOT_DIR -e AZ_BATCH_NODE_STARTUP_DIR=$AZ_BATCH_NODE_STARTUP_DIR --rm -v $AZ_BATCH_NODE_ROOT_DIR:$AZ_BATCH_NODE_ROOT_DIR -e AZ_BATCH_NODE_SHARED_DIR=$AZ_BATCH_NODE_SHARED_DIR	-e AZ_BATCH_NODE_ROOT_DIR=$AZ_BATCH_NODE_ROOT_DIR  -e AZ_BATCH_NODE_STARTUP_DIR=$AZ_BATCH_NODE_STARTUP_DIR rocker/tidyverse:latest Rscript --no-save --no-environ --no-restore --no-site-file --verbose $AZ_BATCH_NODE_STARTUP_DIR/wd/install_custom.R /mnt/batch/tasks/shared/data"
+    "mount -t cifs //<STORAGE_ACCOUNT_NAME>.file.core.windows.net/<FILE_SHARED_NAME> /mnt/batch/tasks/shared/data -o vers=3.0,username=<STORAGE_ACCOUNT_NAME>,password=<STORAGE_ACCOUNT_KEY>,dir_mode=0777,file_mode=0777,sec=ntlmssp"
     ]
 }

samples/package_management/custom/README.md

@@ -28,5 +28,5 @@ Finds files that end with *.tar.gz in the current Azure File Share directory
     ]
 }
 ```
-3) For more information on using Azure Files on Batch, follow our other [sample](./azure_files/readme.md) of using Azure Files
+3) For more information on using Azure Files on Batch, follow our other [sample](../../azure_files/readme.md) of using Azure Files
 4) Replace your Storage Account name, endpoint and key in the cluster configuration file