-
Notifications
You must be signed in to change notification settings - Fork 7
/
salmonella_enterica.fasta
192 lines (192 loc) · 10 KB
/
salmonella_enterica.fasta
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
>SEN_RS00400
gctccgctccggtgccgatgcgtaaaaaaatcctgcgccatgcgaagaaagtgggcttca
tcaacctgatgaaagatggcctgaaaggagtgaccgtattatgacatctcccgttaatgt
ggacgtcaaactgggcgtcaataagttcaatgtggatgaagacagcccgcacatcattct
caaaaccgatcctgataaacaggcgctggaggtgctgattaaggcctgcccggcgggact
gtataaaaagcaggacgacggcagcgttcgttttgattacgccgggtgcctggagtgcgg
aacgtgccggatcctcggccttgatacggcgctggaaaaatgggaatacccgcgcgggac
gtttggcgtggagttccgctacggctaataagtacgaagttgtgcccccgttggccggat
aagatgcggtagcgtcgccatccggcaatcatgtggcgccaatgccggatggcggcggaa
acgcctta
>SEN_RS01225
gtattgaaagtgcttaatgaagtggcggcagatagcgccctttcagagtcggtcagggaa
aaggcagcttatgctgccgcgaacttactggtgagcgattatgtcaatgaatgaaacgta
tcaacccattaattgcgatgactacgatagtcttgagcttgcctgcatgcatcatttaat
actgacgctaacgttaaaagatggcgaggttttgcaggcaaaagcgaacgatttgatctt
acgtaaaaatgtagaatatctgcttgccgaggtttccggcgagtcttgtgagcttcgtct
cgataaaatcgccagtttcagccacccggaaattggtaccgtggtagttagcgaatcctg
agtattttgttgccggatggtggtgcaagcaccttatccggcctacgttccatgcgatac
gtaggcctgataagcgcagcgccatcaggcatgccaaacca
>SEN_RS02220
taacgggtgttgtaagggcgtggcaggcctgatataactgctgcgcggtcgtacttcgaa
ggattcaggtgcgatataaattataaagaggaagagaagagtgaataaatctcaactgat
cgaaaaaattgctgcaggggctgatatctctaaggctgcggctggacgtgcgttagatgc
gattattgcttctgttaccgaatctctgaaagaaggggatgacgttgcactggtaggctt
tggtacttttgctgttaaagagcgtgctgcccgtactggtcgcaacccgcaaacaggtaa
agagatcaccatcgccgctgccaaagtgccgagtttccgtgcaggtaaagcgctgaaaga
cgcggtaaactaagcgtgatcccctcgggggatgtggcaaagtacaagggcgcatcaact
gatgtgccttttttattggcgattcgggactttctgtgcgttgcgggctgaca
>SEN_RS03120
tcccgccggaaggttagcgttaactcgcaacgccttaccggtccagcctgttggcctttt
ttctatcgttataacgcaattattcacccagggggaaaacttgcagggtaaagcactcca
ggattttgttatcgacaaaattgatgacctgaaaggtcaggacatcatcgccttagatgt
tcagggtaaatccagtatcaccgactgtatgattatttgtaccggcacctccagccgtca
cgttatgtctattgccgaccacgtggtgcagtcgtcgcgcgcggccggtatgctgccatt
gggcgtcgaaggcgaaaatgcggctgactggattgtcgtcgatttgggcgatgtgattgt
gcatgtcatgcaggaagaaagtcgccgcctgtatgaactggaaaaactctggagttaatg
cgtgaagctgcaacttgtcgctgtcggcacgaagatgcccgactgggttcaaacgggatt
tacggaatatctgcgtcgttttccgaaagatatgccct
>SEN_RS04225
tcgtgcaggtatgtttttggcatggaatgccacatgactttatctgactggatgcctcac
ggcggaaagcgtgttcgatagagagtgtcaggaggaacgattgaaacataaacacgggtg
ggcaagcgttgtctgctgctttgtactctttattgtggtgtgtctttcattaactatgca
tgtacaaggcgcttttcgcgcggcagggcatcctgagattggactgttattttttacgtt
gcctggtgcggtggccagtttttgttctcaccgacgcgaggtgatccgaccgctgatcgg
ggcgatgctggcggcgccgttttgcctggtgttaatgcgcgtggtatttatgcctacccg
atcgttttggcaagaactggcgtggttatttagcgccgtattctggtgtgcgttaggcgc
gctctgttatttgtttattagcagcctgtttagccaccggcgaaaaaaacgccaatagcg
ccctccggtagagggcgttgccagagcaatcaggcgaaaagattcagattttcttttgcc
catgcttcaaaatccgtacagccgccgatatgtttttg
>fliQ
aatcgccctaccgtttaagctgatgctgtttgtgctggtcgatggttggcaattgcttgt
ggggtcgctggcccaaagcttttacagttagaggcgcaaaatgactcctgaatccgtcat
gatgatgggcaccgaggcgatgaaagtcgctctcgccctggctgcgccgctgttactcgt
cgcgctgattaccggcctcattatcagcatcttgcaggccgcgactcagattaatgaaat
gacgctgtcgtttatccctaaaatcgtcgcggtattcatcgcaattatcgttgccggccc
gtggatgctcaacctgctgctggactacgtacgcactctgttcagcaatttaccttatat
catcggataaacagaacgatgatacaggttacaagcgagcaatggctatactggctgcat
ctctatttctggcctttgctgcgcgtactggcgctgatttcaacggcacc
>SEN_RS07260
ttatggcaagatacgcaatggttcaaaagcgtctttattctgtcatccgtattacttaag
atatcatcacgccccgaaaaatattggaacgaagagatgtatgactaaagaagctgtaat
ctttctatttatcgccatcgtggtagaagttatcgccacgatctcattaaaattatcaga
tagttttacgcgtctggtaccgagcctcgttactatcatcggatattgtattgcgttctg
gtgtcttaccatcccaatgcgaaccatccctgcgggtatcatttatgctatttggtctgg
ggtagggattgttcttattggattgataggatggttatttctcggccaaaaactggatat
gccggctattattggcatgttgcttatcatctgcggcgtaatcgtaatcaatctgttttc
aaaaagtgtcagtcactaggcgatgatgattgatttgagcccgcactctcttatgcgggc
tcgggtatttagcgtaccaccagtacggagcattccgcatgacgcacaacggctgcggc
>SEN_RS08130
tgcctgagctggcgcaatgcgctgtgctaactgattttattttttagtttgctgcgtgca
gcagactcgaaagagtatattctcatgcaggagaagtgtcatgttttactggattttatt
agctctggctatcgcgactgaaattaccggcacgctctcaatgaaatgggctagcgtggg
taatggcaatgcgggttttattttaatgctggtgatgatcacgctgtcatatatatttct
ttcttttgcggtaaaaaagattgccctgggtgtagcgtatgccttatgggaagggatcgg
cattttatttattaccatttttagcgtgctgctatttgatgaagcattatcaaccatgaa
gattgccggcttgctgacgctggtcgccggcatagtattgatcaaatcagggacgcgtaa
acccggcaaaccggtgaaggaggcgactcgtgcaacaatttgaatggatacacggcgcct
ggcttgggctggcaataatgctggaaatcgcggctaacgtactgttgaaattttcggacg
gctttcgccgtaaatgctatggc
>SEN_RS09275
cttttgttcaaaaagtatgaaaaagaggggtagccgtttggctatcccggcgtttctgtg
cagacttatctactcctcttaataaaataaggagtcatttatgcaacaagaacatcgtga
gtgtattgagcagtgttatgaatgcgcggcggcgtgtgatatctgcgcctcttcttgtct
gcgtgaagataacgtcgaaatgatgaagcactgcatccagttagatatgcaatgtgcggc
catttgtcgcctggcggcgcaatttatggcattggaaagcgagtactcacaaaaattatg
ccgcctgtgcgcggatatctgcaaagcctgcgccgaagagtgtgcaaggcacgatcacga
ccattgccagaattgcgcgcgggcatgcagccaatgcgcagacgcctgccttaaaatggc
cgcgtaatttttcttccgccattagctcaaccggatagagcatagagcttctacctctaa
ggttcggggttcaattcctcgatggcggaccagttgatatcaaaaaa
>SEN_RS10605
ctttctcattattttctgatgctcaacagcaagtcagccattctttttcctcgcatcttc
ttatagtcccaactatcggaacactccatgcgaggtctttatgcaacaagaagcactagg
aatggtagaaaccaaaggcttaaccgcagccatagaggccgctgatgcaatggttaagtc
agccaatgtgatgttagtgggctatgaaaagattggctccgggctggtaaccgtcatcgt
gcgcggcgatgttggcgcggtcaaagcggccaccgatgcaggtgccgcagccgcacgcaa
cgtgggtgaagtgaaagccgtacacgtcatcccacgccctcacaccgatgtagaaaaaat
cttaccgaagggaattagccaatgagcagcaatgagctggtggaacagatcatggcgcag
gtgattgcccgtgtggcaacgccggaacaacaggccatccctggtcaaccccaacctata
cgaga
>SEN_RS11540_Chosen
cgatttgagtatagaatctcgcccgcctttgcatacgcaaagcagatcacttacctgttg
ctgggtcgcctgtagcaggaattattaaagagagatttaaatgtttactatcaacgcaga
agtacgtaaagagcagggtaagggtgcgagccgccgcctgcgcgccgctaacaagttccc
ggcaatcatctacggcggttctgaagccccgattgctatcgaactggaccacgaccaggt
gatgaacatgcaagctaaagctgaattctacagcgaagttctgaccctcgttgttgacgg
taaagaagtaaaagttaaagctcaggctgtacagcgtcacgcttacaaaccgaagctgac
tcacatcgacttcgttcgcgcgtaatcgcctggaagttgaagaaaaaccccgccccggcg
gggttttttatgcgtttaattgaatttgacgacatgcagagcaacgagaaaccactttgc
ttttc
>SEN_RS11960
gcctggtggtggcgttccacgtcggtcgtgaagagcgtgcgggcgaagtgctaagcaacc
gcgccgatgaccgcgcgaaaagaaaaacggaggagcgcgcatgatccccttaacacacgg
actgatcctcgctgcgattttattcgtcctgggtttaaccggtctggttatccgccgcaa
tctgctgtttatgctgatcgggctggaaatcatgattaacgcctccgcgctggcctttgt
ggtcgccgggagctactggggccagaccgatggtcaggtgatgtacattctcgccatcag
ccttgcggctgcggaagcgagtattggacttgcgctgttgctgcaactccatcgccgtcg
ccagaacctgaacatcgattcagtaagtgagatgcgtggatgaacatgcttgccttaacc
attattctgccattgattggctttgtactgctggcgttctctcgcggacgctggtcggaa
aatctctccgcgactattggcgt
>SEN_RS12730
taagacgcgcagcgtcgccatccggcatgaatgcgcgccattgcctgatggtgcgcagat
tcaaggcctacgacccaatgggcaatccatggaggcggatatgaaactggcagtcgtcac
aggacaaatcgtatgtaccgtccgccatcagggactggcgcatgacaaattgctgatggt
ggaaatgatcgatgcccagggcaaccccgacgggcagtgtgccgtcgctatcgacagtat
cggggcgggaaccggagagtgggtactgctggtcagcggcagttccgcgcgccaggcgca
tcgcagcgaattatcaccggtcgatctgtgcgtcattggcatcgtcgatgaagtggtggc
tggcgggaaagtggttttccataaataggactgaacatcatgaatcaacaggatattgaa
caggtggtgaaagcggtgctgctgaaaatgaaagacagcagccagccggccagtactgtt
catgagat
>SEN_RS13215
gatgcgaatgatttcaaagagtagttttcatgccgtaaagtagcgcgaaatatgttacgt
ttaaccgatcaaaacacaggcgaccttttcaaggaatagcatgaaaaagattgatgcgat
tattaaacccttcaagctggacgatgtccgtgaagcgctggccgaggtaggtattaccgg
gatgacggtcactgaagtcaaaggctttggccgtcaaaaaggccacaccgagctgtatcg
cggcgcggaatatatggtggattttctgccgaaggtaaaaattgagatcgttgtgcctga
cgacatcgtggatacctgtgttgacaccatcattcgtaccgcgcagacggggaaaatcgg
cgacggtaagatctttgtctttgatgtcgcccgcgttattcgtatccgtactggcgaaga
agacgacgcggctatctgatgtgccgattcgctgcccgtcccctccttgtgggcagcgaa
ccaccgtttaatcgccctgcggtagcgccgatgtagtccgggtgcaaacccatctcagg
>SEN_RS17065
ccattaaccaggtagccgatcgtctgaatatctcaaaacacacggtttacctctatattc
gccagttcaaaagcggcgattttcaggggcaggataaataatgcgttatgccattatggt
caccgggccggcatatggcacccagcaggccagcagcgcattgcagttcgcccacgcgct
gctcaatgaggggcatgagttagccagcgtctttttctatcgggaaggtgtctataacgc
caatctcctgacctcgccggcgagcgatgaatatgatctggtacgcgcctggcagaaatt
gaatacgcagcatggcgtagcgctgaacatctgtgtcgcggcggcgcttcgtcgcggtat
tattgatgaaactgaagccggcagactggagttgccgtccgccaatcttcagccgggctt
tacgctaagcgggctgggcgcgctggcggaggcatctctcacctgcgatcgggtggtgca
gttttaatgaaacgtattgcatttgtcttttccaccgcgccgcacggcagcgcctcaggc
cgtgaaggactggatgcgctgctggcgacgtcagcgctaacggaagc
>SEN_RS17820
ctgaacggcatagaccttttccctgcctgcgtttggccgtctgaccgctagccacgcatg
cagcacactttataatcgcgctttttatgagaaagatgccatgccgcacatttcatctcg
ctttagctccgcctgcatcgcgtttattaaacagtggcagggtctgtcgctggaaaagta
tcgcgatcggcagggtaactgggtgattggttacgggcatatgttgacgccggatgagac
gctgacgttcattacgcccgaccaggcggaggcattcttgctggatgacctcaatagctg
cgatatactgctacagaattgtttgccggaacttaacgatcggtttcaacgcgaaacgct
tattgcgctgatgttcagcatcggacatcagcgttttttatcattaatcaatacgggtga
tatttcacagccagaaataagcggactgcgaatttaacgtcgttaattcgattcatttaa
catcatggcggcctgggtacgattttttacatccagccgccggtaaagcgactccagatg
cgctttaaccgtcccgg
>SEN_RS18985
gctcgtatggctactaaaaatggtcgtcaggttctggcacgtcgtcgtgctaaaggccgc
gctcgtctgaccgtttccaagtaataaagctaacccctgagtggttaagctcgcatttcc
cagggagttacgtttgttaactcccgctcatttcacattcgtcttccagcaacctcaacg
ggctggcacgccgcaaatcaccatcctcggccgcctgaattcgctggggcatccccgtat
cggtcttaccgtcgccaagaaaaatgttcgacgtgcgcatgaacgcaaccggattaaacg
tctgacgcgtgaaagcttccgtctgcgccagcatgaacttcctgcaatggatttcgtggt
ggtggcgaaaaaaggggttgccgacctcgataaccgtgctctctcggaagcgttggaaaa
attatggcgccgccactgtcgcctggctcgcgggtcctgatagcccttattcgggtctat
caacgcctgatcagtccgctgcttgggccgcattgtcgtttcacgccaacgtgctcaagc
tacggaattgaggcattgcg
>SEN_RS20895_Chosen
tcaaaaacataaatattggcatgatttttgtaatagcttacctgaccagacccggtaagc
gccgtgccgccgggcaatgccatctttatggggagcgactatgctggaactactttttgt
gcttggcttttttctgatgttaatggtgacgggcgtctccttgctgggcattctggccgc
gctggttgtagcgactgccgtcatgttcctgggtggaatgttcgccctgatgatcaagct
gttaccgtggctactgctggcggtggctgtggtgtgggtgatcaaagcagtaaaaacgcc
aaaaatcccacagtatcagcgcaataaccgtcggttttactaaggtattgagcggttcgt
cacaacctggaactttgccctcacaagcaaataggaatcgattattaaatctgtcatgat
tgcgcaggtaacgaattcatcgc
>SEN_RS21710
tgatagcaatcatggtgaactcctcagtgttggtcttgtgttttattacgctaccaccta
aacttacttttagtaagtacgtacaaaaaggtaagtatcaatgcgcgctcatactctttc
ccggcagttgcgtgaaggtaatctctttgctgaacagtgcccgtcccgtgaggtgttaaa
acatgtcaccagtcgctggggcgtactgattctggtcgcgttacgcgacggtacacaccg
ttttagcgacctgcgccgcaagatgggaggcgtgagtgaaaagatgctggcgcagtcgtt
acaggcgcttgaacaggacggatttcttaaccgggtgtcatatccagttgttccgccgca
tgtggagtacagcctgacgccgcttggcgagcaggtgagcgataaagtcgccgcgctggc
ggactggatagaactgaatttgccgcaggtattggcgcagcgggagcgtttatcagatgg
cggctagcgctttattcggcctgccagtcaggccgaataaacgcagcgccatgcgggact
cacgttacttgctcaaatccacctgataaatggcaaaaccgatatca