Using only trueCoverage_rematch.py

[ajkarloss]

We are planing to use trueCoverage_rematch.py in one of our pipelines.

1. is it possible to use only that module? or do we need to install the whole INNUca?
2. And, is there any documentation on that module on the steps involved in the module to understand how it works?

Thanks

[ramirma]

Hi @ajkarloss. @miguelpmachado is the INNUca wizard but he is no longer in the lab, so INNUca development has slowed. In principle you can use the module independently (as long as you have the dependencies installed) but we do not have any documentation specific to trueCoverage_rematch.py. The module is based on ReMaTCh (https://github.com/B-UMMI/ReMatCh) which later also became part of seq_typing (https://github.com/B-UMMI/seq_typing). The later have documentation so they may be helpful to you.