actions-test.yml

name: Python Package using Conda

on: [push]


jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 5

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python 3.9
      uses: actions/setup-python@v2
      with:
        python-version: 3.9
    - name: Add conda to system path
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        echo $CONDA/bin >> $GITHUB_PATH
        echo "Pip is at $(which pip)"
        echo $CONDA
        echo $GITHUB_PATH

    - name: pip cache
      uses: actions/cache@v2
      id: cache
      with:
        path: /usr/share/miniconda/lib/python3.8/site-packages/*
        key: ${{ runner.os }}-condapip-${{ secrets.CACHE_VERSION }}-${{ hashFiles('requirements.txt') }}
        restore-keys: |
          ${{ runner.os }}-condapip-
          ${{ runner.os }}

    - name: Install conda dependencies
      if: steps.cache.outputs.cache-hit != 'true'
      run: |
        echo "Cache miss. Installing dependencies"
        conda install -yq pip numpy scipy h5py sphinx matplotlib pandas networkx cffi jupyter psutil sqlalchemy ipykernel ipywidgets
    - name: Install pip dependencies
      if: steps.cache.outputs.cache-hit != 'true'
      run: |
        echo "Cache miss. Installing dependencies"
        echo "Pip is at $(which pip)"
        echo "Env python location: ${{ env.pythonLocation}}"
        pip install recommonmark sphinx-rtd-theme nbsphinx mkdocs markdown commonmark

    - name: Install BBN dependencies
      run: |
        export GIT_LFS_SKIP_SMUDGE=1
        pip install git+https://github.com/BBN-Q/bbndb.git
        pip install git+https://github.com/BBN-Q/QGL.git@develop
        pip install git+https://github.com/spatialaudio/nbsphinx.git@master
        pip install pyvisa coveralls scikit-learn pyusb future python-usbtmc setproctitle progress serial
        export GIT_LFS_SKIP_SMUDGE=0

    - name: Test with unittest
      run: |
        pip install -e .
        python -m unittest discover -v test
    - name: Build Documentation
      run: |
        cd doc
        make html
        cd ..
    - name: Commit documentation changes
      run: |
        echo "Cloning from $GITHUB_SERVER_URL/$GITHUB_REPOSITORY.git"
        git clone $GITHUB_SERVER_URL/$GITHUB_REPOSITORY.git --branch gh-pages --single-branch gh-pages
        cp -r doc/_build/html/* gh-pages/
        cp -r doc/_build/html auspex_documentation
        cd gh-pages
        git config --local user.email "action@github.com"
        git config --local user.name "GitHub Action"
        git add .
        git commit -m "Update documentation" -a || true
        # The above command will fail if no changes were present, so we ignore
        # the return code.
    - name: Push changes
      uses: ad-m/github-push-action@master
      with:
        branch: gh-pages
        directory: gh-pages
        github_token: ${{ secrets.GITHUB_TOKEN }}
    - name: Auspex Documentation
      uses: actions/upload-artifact@v4
      with:
        path: auspex_documentation