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STAR breaks mm Matrix format for Velocyto output #50

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frenkiboy opened this issue Apr 16, 2020 · 0 comments
Open

STAR breaks mm Matrix format for Velocyto output #50

frenkiboy opened this issue Apr 16, 2020 · 0 comments
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@frenkiboy
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STAR mm matrix for velocyto output has three columns for counts - spliced, unsplice, rest.
mm parser from scipy does not allow such format - velocyto counts in pigx output are currently wrong (contain spliced instead of unspliced)
@frenkiboy frenkiboy added the bug Something isn't working label Apr 16, 2020
@frenkiboy frenkiboy self-assigned this Apr 16, 2020
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