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artic-ncov2019_v2.yml
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name: artic-ncov2019_v2
channels:
- artic-network
- bioconda
- anaconda
- r
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=0_gnu
- _tflow_select=2.3.0=mkl
- absl-py=0.9.0=py36_0
- appdirs=1.4.3=py_1
- args=0.1.0=py36_1001
- astor=0.7.1=py_0
- attrs=19.3.0=py_0
- bcftools=1.9=h68d8f2e_9
- binutils=2.34=h53a641e_0
- binutils_impl_linux-64=2.34=h53a641e_0
- biopython=1.74=py36h516909a_0
- blas=2.14=openblas
- brotlipy=0.7.0=py36h8c4c3a4_1000
- bwa=0.7.17=pl5.22.0_2
- bzip2=1.0.8=h516909a_2
- c-ares=1.15.0=h516909a_1001
- ca-certificates=2020.4.5.1=hecc5488_0
- certifi=2020.4.5.1=py36h9f0ad1d_0
- cffi=1.14.0=py36hd463f26_0
- chardet=3.0.4=py36h9f0ad1d_1006
- clint=0.5.1=py36_0
- cmake=3.17.0=h28c56e5_0
- configargparse=1.2.1=pyh9f0ad1d_0
- cryptography=2.8=py36h45558ae_2
- curl=7.69.1=h33f0ec9_0
- datrie=0.8.2=py36h8c4c3a4_0
- dbus=1.13.6=he372182_0
- decorator=4.4.2=py_0
- docutils=0.16=py36h9f0ad1d_1
- eigen=3.2=3
- ete3=3.1.1=py36_0
- expat=2.2.9=he1b5a44_2
- fontconfig=2.13.1=h86ecdb6_1001
- freetype=2.10.1=he06d7ca_0
- gast=0.3.3=py_0
- gettext=0.19.8.1=hc5be6a0_1002
- gitdb=4.0.4=py_0
- gitpython=3.1.1=py_0
- glib=2.64.2=h6f030ca_0
- goalign=0.2.8=0
- google-pasta=0.2.0=pyh8c360ce_0
- gotree=0.2.10=0
- grpcio=1.23.0=py36h769ab6c_1
- gsl=2.5=h294904e_1
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- h5py=2.7.1=py36_1
- hdf5=1.8.18=3
- htslib=1.9=h244ad75_9
- icu=64.2=he1b5a44_1
- idna=2.9=py_1
- importlib-metadata=1.6.0=py36h9f0ad1d_0
- importlib_metadata=1.6.0=0
- intervaltree=3.0.2=py_0
- iqtree=1.6.12=he513fc3_1
- jpeg=9c=h14c3975_1001
- jsonschema=3.2.0=py36h9f0ad1d_1
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.0=py_0
- krb5=1.17.1=h2fd8d38_0
- ld_impl_linux-64=2.34=h53a641e_0
- libblas=3.8.0=14_openblas
- libcblas=3.8.0=14_openblas
- libclang=9.0.1=default_hde54327_0
- libcurl=7.69.1=hf7181ac_0
- libdeflate=1.3=h516909a_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1007
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.2.0=h24d8f2e_2
- libgfortran=3.0.0=1
- libgfortran-ng=7.3.0=hdf63c60_5
- libgomp=9.2.0=h24d8f2e_2
- libiconv=1.15=h516909a_1006
- liblapack=3.8.0=14_openblas
- liblapacke=3.8.0=14_openblas
- libllvm9=9.0.1=he513fc3_1
- libopenblas=0.3.7=h5ec1e0e_6
- libpng=1.6.37=hed695b0_1
- libprotobuf=3.11.4=h8b12597_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.2.0=hdf63c60_2
- libuuid=2.32.1=h14c3975_1000
- libuv=1.34.0=h516909a_0
- libxcb=1.13=h14c3975_1002
- libxkbcommon=0.10.0=he1b5a44_0
- libxml2=2.9.10=hee79883_0
- libxslt=1.1.33=h31b3aaa_0
- llvm-openmp=8.0.1=hc9558a2_0
- longshot=0.4.1=h80880c6_0
- lxml=4.5.0=py36h17c4326_1
- mafft=7.407=0
- mappy=2.17=py36h84994c4_0
- markdown=3.2.1=py_0
- medaka=0.12.1=py36h148d290_0
- minimap2=2.17=h8b12597_1
- mpi=1.0=openmpi
- muscle=3.8.1551=2
- nanopolish=0.13.0=ha077697_0
- ncurses=6.1=hf484d3e_1002
- networkx=2.4=py_1
- nodejs=12.16.1=h67efad7_0
- nspr=4.25=he1b5a44_0
- nss=3.47=he751ad9_0
- numpy=1.16.1=py36h99e49ec_1
- numpy-base=1.16.1=py36h2f8d375_1
- openmp=8.0.1=0
- openmpi=4.0.3=hdf1f1ad_1
- openssl=1.1.1f=h516909a_0
- pandas=0.23.0=py36_1
- parasail-python=1.2=py36h8b12597_0
- pcre=8.44=he1b5a44_0
- perl=5.22.0.1=0
- phyml=3.3.20190909=h516909a_0
- pip=20.0.2=py_2
- progressbar33=2.4=py_0
- protobuf=3.11.4=py36h831f99a_1
- psutil=5.7.0=py36h8c4c3a4_1
- pthread-stubs=0.4=h14c3975_1001
- pycparser=2.20=py_0
- pyfaidx=0.5.8=py_1
- pyopenssl=19.1.0=py_1
- pyqt=5.12.3=py36hcca6a23_1
- pyrsistent=0.16.0=py36h8c4c3a4_0
- pysam=0.15.3=py36hbcae180_3
- pysocks=1.7.1=py36h9f0ad1d_1
- python=3.6.10=h8356626_1010_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.6=1_cp36m
- pytz=2019.3=py_0
- pyvcf=0.6.8=py36_0
- pyyaml=5.3.1=py36h8c4c3a4_0
- qt=5.12.5=hd8c4c69_1
- rampart=1.0.5=0
- ratelimiter=1.2.0=py36_1000
- readline=8.0=hf8c457e_0
- requests=2.23.0=pyh8c360ce_2
- rhash=1.3.6=h14c3975_1001
- samtools=1.9=h10a08f8_12
- scipy=1.4.1=py36h2d22cac_3
- seqtk=1.3=hed695b0_2
- setuptools=46.1.3=py36h9f0ad1d_0
- six=1.14.0=py_1
- smmap=3.0.2=pyh9f0ad1d_0
- snakemake-minimal=5.8.1=py_0
- sortedcontainers=2.1.0=py_0
- sqlite=3.30.1=hcee41ef_0
- tensorboard=1.14.0=py36_0
- tensorflow=1.14.0=mkl_py36h2526735_0
- tensorflow-base=1.14.0=mkl_py36h7ce6ba3_0
- tensorflow-estimator=1.14.0=py36h5ca1d4c_0
- termcolor=1.1.0=py_2
- tk=8.6.10=hed695b0_0
- urllib3=1.25.9=py_0
- werkzeug=1.0.1=pyh9f0ad1d_0
- whatshap=0.18=py36h6bb024c_0
- wheel=0.34.2=py_1
- wrapt=1.12.1=py36h8c4c3a4_1
- xopen=0.9.0=py36h9f0ad1d_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.9=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.5=h516909a_0
- yaml=0.2.4=h516909a_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h516909a_1006
- pip:
- artic==1.0.0
- binlorry==1.3.0a1
- more-itertools==8.2.0
- ont-fast5-api==3.1.1
- packaging==20.3
- pluggy==0.13.1
- porechop==0.3.2rc0
- py==1.8.1
- pyparsing==2.4.7
- pyqt5-sip==4.19.18
- pyqtwebengine==5.12.1
- pytest==5.4.1
- tqdm==4.45.0
- wcwidth==0.1.9
prefix: /processing_Data/bioinformatics/pipelines/miniconda3/envs/artic-ncov2019_v2