pyproject.toml

[build-system]
requires = [
  "setuptools >= 42",
  "wheel",
  "setuptools_scm[toml]>=3.4",
]
build-backend = "setuptools.build_meta"

[tool.setuptools_scm]
write_to = "pado/_version.py"
version_scheme = "post-release"

[tool.pytest.ini_options]
addopts = [
  "-v",
  # (only needed by windows) disable faulthandler plugin to suppress non-fatal error msgs
  "-p", "no:faulthandler",
]
norecursedirs = "scripts"
filterwarnings = [
    "ignore:invalid Aperio image description",
]

[tool.coverage.run]
source = ["pado"]

[tool.coverage.report]
exclude_lines = [
  "pragma: no cover",
  "raise NotImplementedError",
  "if TYPE_CHECKING:",
  "if MYPY:",
  "from typing_extensions import",
  "[.][.][.]$",
]

[tool.black]
target-version = ['py37']
include = '\.pyi?$'
exclude = '''
(
  /(
      \.eggs
    | \.git
    | \.mypy_cache
    | \.venv
    | venv.*
    | build
    | dist
    | ci
  )/
)
'''

[tool.isort]
profile = "black"
py_version = "37"
force_single_line = true
add_imports = ["from __future__ import annotations"]
extend_skip = ["setup.py", "docs/source/conf.py"]

[tool.mypy]
python_version = 3.8
plugins = ["pydantic.mypy"]
exclude = [
  "^venv",
  "^build",
  "^docs",
  "^.*/tests",
  "^_stash",
  "^pado/_version.py",
  "^setup.py",
]
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_return_any = false
warn_unused_configs = true
check_untyped_defs = true
disallow_any_generics = false
disallow_incomplete_defs = false
disallow_untyped_defs = false

[[tool.mypy.overrides]]
module = [
  "cv2.*",
  "dynaconf.*",
  "jpype.*",
  "pandera.*",
  "orjson.*",
  "fsspec.*",
  "pandas.*",
  "pyarrow.*",
  "shapely.*",
  "tifffile.*",
  "toml.*",
  "tqdm.*",
  "zarr.*",
  "PIL.*",
]
ignore_missing_imports = true