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How do I find where run_colocation stores its results in adata? #368

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singhbhavya opened this issue Jun 3, 2024 · 0 comments
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Please use the template below to post a question to https://discourse.scverse.org/c/ecosytem/cell2location/.

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Hi there! I followed the tutorial for "Identifying cellular compartments / tissue zones using matrix factorisation (NMF)". I successfully ran run_colocation, and all the results files were created. I am just confused about where the resulting data is stored in the adata itself. According to the tutorial, it should be in adata.uns[f"mod_coloc_n_fact{n_fact}"], but I haven't been able to obtain them for any of the factor numbers - every time, I get a key error when I do adata.uns["mod_coloc_n_fact10"].

@singhbhavya singhbhavya added the question Further information is requested label Jun 3, 2024
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