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lines changed Original file line number Diff line number Diff line change @@ -52,13 +52,17 @@ jobs:
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- uses : actions/checkout@v3
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- name : mamba environment and package installation
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- uses : mamba-org/provision-with- micromamba@main
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+ uses : mamba-org/setup- micromamba@v1
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with :
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environment-file : devtools/conda-envs/test_env.yaml
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- channel-priority : " flexible"
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+ condarc : |
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+ channels:
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+ - conda-forge
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+ - bioconda
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+ channel_priority: flexible
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cache-downloads : true
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- cache-env : true
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- extra-specs : |
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+ cache-environment : true
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+ create-args : >-
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python=${{ matrix.python-version }}
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- name : Python version information
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- name : Install pybol (fixture staging tool)
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run : |
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python -m pip install pybol
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+
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- name : Install GROMACS (${{ matrix.gromacs-version }})
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# include mdanalysis here AGAIN to work around micromamba removing mdanalysis
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# while downgrading libxml2 (see issue #252)
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