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update to mamba-org/setup-micromamba
fix #251
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.github/workflows/ci.yaml

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@@ -52,13 +52,17 @@ jobs:
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- uses: actions/checkout@v3
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- name: mamba environment and package installation
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uses: mamba-org/provision-with-micromamba@main
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uses: mamba-org/setup-micromamba@v1
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with:
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environment-file: devtools/conda-envs/test_env.yaml
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channel-priority: "flexible"
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condarc: |
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channels:
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- conda-forge
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- bioconda
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channel_priority: flexible
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cache-downloads: true
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cache-env: true
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extra-specs: |
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cache-environment: true
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create-args: >-
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python=${{ matrix.python-version }}
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- name: Python version information
@@ -73,6 +77,7 @@ jobs:
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- name: Install pybol (fixture staging tool)
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run: |
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python -m pip install pybol
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- name: Install GROMACS (${{ matrix.gromacs-version }})
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# include mdanalysis here AGAIN to work around micromamba removing mdanalysis
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# while downgrading libxml2 (see issue #252)

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