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recent java 17 not supported #230
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Yes, that's right. DISCVR-seq is dependent on GATK4, and therefore we need to follow what they support. GATK is working on supporting newer java versions, see here: broadinstitute/gatk#8035 (comment). When they release a version compatible with newer java I expect to update DISCVR-seq accordingly. |
perfect, thanks for the info |
@splaisan: GATK updated to a version that supports newer java, and I just updated DISCVR-seq to use this. I believe the latest version should support modern java versions: https://github.com/BimberLab/DISCVRSeq/releases/tag/1.3.28 |
Thanks @bbimber for this new version Best
running it in a conda env with java 8 also fails while it works with the previous build but this seems normal since it was compiled for modern java.
previous version
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@splaisan Thanks, and I see this too. I'll look into it. |
@splaisan: when you have a minute, can you please try the latest JAR for 1.3.28: https://github.com/BimberLab/DISCVRSeq/releases/tag/1.3.28 |
Hi @bbimber thanks a lot for your support |
Hi,
I think this is a known issue, but I do not find an issue page for it.
I recently updated my java to run other apps and it does not run your tool and dies with:
Your docker version runs as well as your latest version in a conda env with java8 installed.
Do you have plans to update your code so it works under the current java?
Thanks
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