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Welcome to the BioDocker specification wiki!

Here you will find instructions and guidelines on how to use and contribute to BioDocker.

• General contribution guidelines
• Deploying a new project
• BioDocker Base Image
• DockerHub Automated Build Resources
• Dockerfile
• Best practices
• Dockerfile template
• Project folder organization
• Help
• Using input and output files
• Examples
• Database search with Comet
• Protein identification with Comet, PeptideProphet and ProteinProphet
• Running DIA Umpire Pipeline
• Genome Mapping and SNP Calling
• Running Docker images with rkt
• Governance
• DockerHub Setup