-
Notifications
You must be signed in to change notification settings - Fork 13
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Finding a map between observed bases and positions in the reference genome #46
Comments
As a first pass, I'd look here and set up the
|
Thank you for the prompt response. I'm trying to deal with the case of a read that contains short deletions, so the read length is smaller than the |
I was wondering if there is a more easy solution than parsing the cigar. |
Ah, that I don't know. Will have to wait for someone more familiar with the format to weigh in, sorry. |
Hi,
Thank you for building and maintaining this great package --- I wouldn't start analyzing genomic data via Julia without it!
I have a steps that I used to perform using pysam, but could not figure how they can be done via XAM:
Would you be able to guide me how this can be done?
Sincerely,
Daniel
The text was updated successfully, but these errors were encountered: