DESCRIPTION

Package: lineagespot
Title: Detection of SARS-CoV-2 lineages in wastewater samples using 
    next-generation sequencing
Version: 1.1.1
Date: 2021-03-24
Authors@R: c(
    person(given = "Nikolaos",
            family = "Pechlivanis",
            role = c("aut", "cre"),
            email = "inab.bioinformatics@lists.certh.gr",
            comment = c(ORCID = "0000-0003-2502-612X")),
    person("Maria", "Tsagiopoulou", email = "-", role = "aut"),
    person("Maria Christina", "Maniou", email = "-", role = "aut"),
    person("Anastasis", "Togkousidis", email = "-", role = "aut"),
    person("Evangelia", "Mouchtaropoulou", email = "-", role = "aut"),
    person("Taxiarchis", "Chassalevris", email = "-", role = "aut"),
    person("Serafeim", "Chaintoutis", email = "-", role = "aut"),
    person("Chrysostomos", "Dovas", email = "-", role = "aut"),
    person("Maria", "Petala", email = "-", role = "aut"),
    person("Margaritis", "Kostoglou", email = "-", role = "aut"),
    person("Thodoris", "Karapantsios", email = "-", role = "aut"),
    person("Stamatia", "Laidou", email = "-", role = "aut"),
    person("Elisavet", "Vlachonikola", email = "-", role = "aut"),
    person("Aspasia", "Orfanou", email = "-", role = "aut"),
    person("Styliani-Christina", "Fragkouli", email = "-", role = "aut"),
    person("Sofoklis", "Keisaris", email = "-", role = "aut"),
    person("Anastasia", "Chatzidimitriou", email = "-", role = "aut"),
    person("Agis", "Papadopoulos", email = "-", role = "aut"),
    person("Nikolaos", "Papaioannou", email = "-", role = "aut"),
    person("Anagnostis", "Argiriou", email = "-", role = "aut"),
    person("Fotis E.", "Psomopoulos", email = "-", role = "aut")
    )
Description: Lineagespot is a framework written in R, and aims to identify 
    SARS-CoV-2 related mutations based on a single (or a list) of variant(s) 
    file(s) (i.e., variant calling format). The method can facilitate the 
    detection of SARS-CoV-2 lineages in wastewater samples using next 
    generation sequencing, and attempts to infer the potential distribution 
    of the SARS-CoV-2 lineages. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
biocViews: VariantDetection, VariantAnnotation, Sequencing
Imports:
    VariantAnnotation,
    MatrixGenerics,
    SummarizedExperiment,
    data.table,
    stringr,
    httr,
    utils
Suggests:
    BiocStyle,
    RefManageR,
    rmarkdown,
    knitr,
    testthat (>= 3.0.0)
URL: https://github.com/BiodataAnalysisGroup/lineagespot
BugReports: https://github.com/BiodataAnalysisGroup/lineagespot/issues
BiocType: Software
VignetteBuilder: knitr
Config/testthat/edition: 3