make fail

[yi1873]

src/Runner.cpp: In member function ‘int Runner::run()’:
src/Runner.cpp:89:54: error: ‘Runner::largest_count’ is not a variable in clause ‘reduction’
Makefile:35: recipe for target 'bin/./src/Runner.o' failed
make[1]: *** [bin/./src/Runner.o] Error 1
make[1]: Leaving directory '/home/software/FASTCAR/src/cluster'
Makefile:10: recipe for target 'bin/fastcar' failed
make: *** [bin/fastcar] Error 2

[benjamin-james]

New commit should fix, confirmed to work on GCC 5.0 (Docker)

[yi1873]

@benjamin-james FASTCAR installed successfully. But there are some errors when I test the fastcar.

errors

Reading in sequences [=================================================] 100 %
K: 11
sequences read in: used memory: 51032 KB
Using 8 bit histograms
before do_run: used memory: 51032 KB
fastcar.sh: line 1: 10055 Segmentation fault (core dumped) /usr/bin/fastcar Ecol.fa --query reads.fa --id 0.80 --output F3P2.fastcar --threads 4 --mode rc --feat fast --chunk 10000

[benjamin-james]

Can you please share the data sets you used for me to replicate this error?

[yi1873]

Send the files to you (benjamin-james@utulsa.edu) by email. Please check it.