build.yml

name: Build
on: push
jobs:
   main:
      strategy:
        fail-fast: false
        matrix:
          os: ["ubuntu-latest", "macos-latest", "windows-latest"]
      runs-on: ${{ matrix.os }}
      defaults:
        run:
          shell: bash -el {0}
      steps:
      - name: Clone
        uses: actions/checkout@v4
        with:
           submodules: recursive
      - name: Install conda environment
        uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          environment-file: environment.yml
          activate-environment: eat
      - name: Compile (Linux, Mac)
        run: source ./install
        if: matrix.os != 'windows-latest'
      - name: Compile (Windows)
        run: |
          conda install -c conda-forge ninja msmpi
          source ./install -G Ninja -DCMAKE_Fortran_COMPILER=gfortran
        if: matrix.os == 'windows-latest'
      # - name: Run 2d test case
      #   run: |
      #     source ${CONDA}/etc/profile.d/conda.sh
      #     conda activate eat
      #     cd tests/2d/
      #     mpiexec -np 1 eat_obs_2d : -np 1 eat_filter_pdaf : -np 9 eat_model_2d
      #     mpiexec -np 1 eat_obs_2d : -np 1 eatpy-filter : -np 9 eat_model_2d
      - name: Clone gotm-cases
        run: |
          git clone -b v6.0 https://github.com/gotm-model/cases.git gotm-cases
      - name: Run gotm test case
        run: |
          cd tests/nns_annual
          eat-gotm   # this will write the restart that the next command operates on
          eat-gotm-gen restart restart.nc 2 --exclude z --exclude zi --exclude h
          mpiexec -n 2 eat-gotm --separate_gotm_restart
          eat-gotm-gen yaml gotm.yaml 2 -p surface/u10/scale_factor 0.2 -p surface/v10/scale_factor 0.2 -p turbulence/turb_param/k_min 0.2
          mpiexec -n 1 python run.py : -n 2 eat-gotm --separate_gotm_yaml