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I agree with you; I believe right now the export functionality for HTML is still in its infant stages. An option should be available to each do (Documents - Current) or All (which should include all project files). I think the only way to achieve this would be to have a 'Project Folder' of sorts to handle the export. For this type of functionality I still utilize Sublime Text but I do hope Boostnote has it in the future.
I tried the export from Boostnote, nice to have but all references in the HTML are linked to the local installation like this part of an export:
Please include all files like CSS and IMAGES directly in the html.
For Visual Studio Code (https://github.com/dfinke/vscode-pandoc) or Atom there a plugins who are calling pandoc.
On my windows system i am using a batch file to convert markdown to html or pdf.
So please change the export or give us an option for custom export with args, so i can call my batch file.
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