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0README
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0README
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# Setting up a work directory:
#
mkdir Xa7PAPER
cd Xa7PAPER/
# Getting what we need:
#
wget -O AllRice-1.0.0.tar.gz https://github.com/BrendelGroup/AllRice/archive/refs/tags/v1.0.0.tar.gz
tar -xzf AllRice-1.0.0.tar.gz
cd AllRice-1.0.0/
cd prj/LHRWBY2021/tools
source 0README
#
# ... provides:
# AllRice.sif DDN.sif GoRAMPAGE/ tsr.sif
cd ..
cd reads/DDN/IRBB7
bash ./0Record
# ... for this to work, the scp commands in ddn*/0Record have to be replaced
# with a publicly accessible download
cd ../../..
cd genomes/DiscovarDeNovo/IRBB7ddn
bash 0Record
cd ../../IRGSP
bash ./0README
cd ../IRBB7
bash ./0README
cd ../../reads/RAMPAGE
bash ./0README
cd ../../IRBB7-RAMPAGE
bash ./0README >& log
cd ../reads/RNASEQ
bash ./0README
# ... for this to work, the scp command in raw/0Record has to be replaced
# with a publicly accessible download
cd ../../IRBB7-RNASEQ
bash ./0README