Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

biowulf-specific mount paths do not work on FRCE #64

Closed
kelly-sovacool opened this issue Dec 21, 2023 · 0 comments · Fixed by #78
Closed

biowulf-specific mount paths do not work on FRCE #64

kelly-sovacool opened this issue Dec 21, 2023 · 0 comments · Fixed by #78
Assignees
@kelly-sovacool
Labels
bug Something isn't working RENEE RepoName
Milestone
2024-01

Comments

@kelly-sovacool
Copy link
Member

kelly-sovacool commented Dec 21, 2023 •
edited
Loading

When running the test dataset on FRCE, jobs fail because of biowulf-specific mount paths:

FATAL:   container creation failed: mount /data/CCBR_Pipeliner->/data/CCBR_Pipeliner error: while mounting /data/CCBR_Pipeliner: mount source /data/CCBR_Pipeliner doesn't exist

This occurs with renee v2.3 and 2.5.8
@kopardev kopardev added the RENEE RepoName label Dec 21, 2023
@kelly-sovacool kelly-sovacool added the bug Something isn't working label Dec 21, 2023
@kelly-sovacool kelly-sovacool self-assigned this Jan 3, 2024
@kelly-sovacool kelly-sovacool mentioned this issue Jan 4, 2024
Merged
2 tasks
@kelly-sovacool kelly-sovacool added this to the Jan 2024 milestone Jan 10, 2024
@kopardev kopardev modified the milestones: Jan 2024, Jan 2025 Jan 24, 2024
@kelly-sovacool kelly-sovacool modified the milestones: Jan 2025, Jan 2024 Jan 24, 2024
@kopardev kopardev modified the milestones: Jan 2024, 2024-01 Jan 26, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@kelly-sovacool kelly-sovacool

Labels
bug Something isn't working RENEE RepoName
Projects
None yet
Milestone
2024-01
Development

Successfully merging a pull request may close this issue.

feat: set fastq screen & kraken db shared resource paths depending on HPC CCBR/RENEE
2 participants
@kopardev @kelly-sovacool