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Migrate all resources to S3 bucket #89

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kelly-sovacool opened this issue Jan 11, 2024 · 0 comments
Open

Migrate all resources to S3 bucket #89

kelly-sovacool opened this issue Jan 11, 2024 · 0 comments
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kelly-sovacool commented Jan 11, 2024

This will allow us to get rid of the FRCE & Biowulf-specific code as well as redundant resources. We can also add a command to locally download the resources.

"FUSIONBLACKLIST": "s3://nciccbr/Resources/RNA-seq/arriba/blacklist_hg38_GRCh38_v2.0.0.tsv.gz",
"FUSIONCYTOBAND": "s3://nciccbr/Resources/RNA-seq/arriba/cytobands_hg38_GRCh38_v2.0.0.tsv",
"FUSIONPROTDOMAIN": "s3://nciccbr/Resources/RNA-seq/arriba/protein_domains_hg38_GRCh38_v2.0.0.gff3"

We should also split up genome config files into species vs annotation specific files to avoid file duplication.

May want to wait on this until we migrate to nextflow, which has better design patterns for genome configs.

@kopardev kopardev added the RENEE RepoName label Jan 11, 2024
@kelly-sovacool kelly-sovacool added the enhancement New feature or request label Jan 11, 2024
@kopardev kopardev added this to the 2024-06 milestone May 21, 2024
@kopardev kopardev self-assigned this Nov 4, 2024
@kopardev kopardev modified the milestones: 2024-06, 2024-11 Nov 4, 2024
@kelly-sovacool kelly-sovacool modified the milestones: 2024-11, 2024-12 Dec 4, 2024
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