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feat: add taxid info to diamond output #15

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kopardev opened this issue Oct 12, 2023 · 2 comments · Fixed by #22
Closed

feat: add taxid info to diamond output #15

kopardev opened this issue Oct 12, 2023 · 2 comments · Fixed by #22
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ccbr1271_ERVpipeline RepoName
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2023-10

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extract taxid and other info using the accession id via biopython
@kopardev kopardev self-assigned this Oct 12, 2023
@kopardev kopardev added this to the 2023w41_1013 milestone Oct 12, 2023
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Was able to reproduce Stephanie's error using her R-scripts:
image

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kopardev commented Oct 13, 2023 •
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Using biopython gets this error:
image
try sleeping:

  • 1 s
  • 3 s
  • parsing all accession ids using a list instead of 1-by-1

@kopardev kopardev modified the milestones: 2023w41_1013, 2023w43_1027 Oct 23, 2023
@kopardev kopardev mentioned this issue Jan 19, 2024
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@kopardev kopardev modified the milestones: 2023w43_1027, 2023-10 Jan 26, 2024
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v1.0 draft CCBR/ccbr1271_ERVpipeline
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