Tripoli Crashes on Triton .exp import

[noahmclean]

Tripoli Version: 0.5.4
Java Version: 17.0.8.1
JavaFX Version: 17.0.8+1+b01
OS: Mac OS X 14.5

Issue details: Drag and drop opening a Triton TIMS data files (.exp files), e.g., from TripoliTestData, produces no response and the following error message in the terminal:

Tripoli Resources loaded
Exception in thread "JavaFX Application Thread" java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at javafx.fxml/javafx.fxml.FXMLLoader$MethodHandler.invoke(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader$ControllerMethodEventHandler.handle(Unknown Source)
at javafx.base/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
at javafx.base/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
at javafx.base/javafx.event.Event.fireEvent(Unknown Source)
at javafx.controls/javafx.scene.control.MenuItem.fire(Unknown Source)
at org.cirdles.tripoli.gui.TripoliGUIController.lambda$initialize$1(TripoliGUIController.java:196)
at javafx.base/com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(Unknown Source)
at javafx.base/com.sun.javafx.event.EventUtil.fireEventImpl(Unknown Source)
at javafx.base/com.sun.javafx.event.EventUtil.fireEvent(Unknown Source)
at javafx.base/javafx.event.Event.fireEvent(Unknown Source)
at javafx.graphics/javafx.scene.Scene$DnDGesture.fireEvent(Unknown Source)
at javafx.graphics/javafx.scene.Scene$DnDGesture.processTargetDrop(Unknown Source)
at javafx.graphics/javafx.scene.Scene$DropTargetListener.drop(Unknown Source)
at javafx.graphics/com.sun.javafx.tk.quantum.GlassSceneDnDEventHandler.lambda$handleDragDrop$2(Unknown Source)
at java.base/java.security.AccessController.doPrivileged(Unknown Source)
at javafx.graphics/com.sun.javafx.tk.quantum.GlassSceneDnDEventHandler.handleDragDrop(Unknown Source)
at javafx.graphics/com.sun.javafx.tk.quantum.GlassViewEventHandler.lambda$handleDragDrop$11(Unknown Source)
at javafx.graphics/com.sun.javafx.tk.quantum.QuantumToolkit.runWithoutRenderLock(Unknown Source)
at javafx.graphics/com.sun.javafx.tk.quantum.GlassViewEventHandler.handleDragDrop(Unknown Source)
at javafx.graphics/com.sun.glass.ui.View.handleDragDrop(Unknown Source)
at javafx.graphics/com.sun.glass.ui.View.notifyDragDrop(Unknown Source)
Caused by: java.lang.reflect.InvocationTargetException
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.sun.javafx.reflect.Trampoline.invoke(Unknown Source)
at jdk.internal.reflect.GeneratedMethodAccessor2.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at javafx.base/com.sun.javafx.reflect.MethodUtil.invoke(Unknown Source)
at javafx.fxml/com.sun.javafx.fxml.MethodHelper.invoke(Unknown Source)
... 36 more
Caused by: javafx.fxml.LoadException:
file:/Users/n733m382/Documents/Tripoli/Versions/Tripoli-0.5.4.jar!/org/cirdles/tripoli/gui/AnalysesManager.fxml

at javafx.fxml/javafx.fxml.FXMLLoader.constructLoadException(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.loadImpl(Unknown Source)
at javafx.fxml/javafx.fxml.FXMLLoader.load(Unknown Source)
at org.cirdles.tripoli.gui.TripoliGUIController.launchAnalysesManager(TripoliGUIController.java:449)
at org.cirdles.tripoli.gui.TripoliGUIController.manageAnalysisMenuItemAction(TripoliGUIController.java:462)
... 46 more

Caused by: java.lang.NullPointerException: Cannot invoke "org.cirdles.tripoli.sessions.analysis.massSpectrometerModels.dataSourceProcessors.MassSpecOutputBlockRecordFull.baselineIDs()" because the return value of "java.util.Map.get(Object)" is null
at org.cirdles.tripoli.sessions.analysis.Analysis.prettyPrintAnalysisDataSummary(Analysis.java:484)
at org.cirdles.tripoli.gui.AnalysisManagerController.populateAnalysisDataFields(AnalysisManagerController.java:358)
at org.cirdles.tripoli.gui.AnalysisManagerController.populateAnalysisManagerGridPane(AnalysisManagerController.java:319)
at org.cirdles.tripoli.gui.AnalysisManagerController.initialize(AnalysisManagerController.java:251)
... 56 more

[bowring]

which file? .exp work for me ( i didn't try all of them)

[bowring]

when it crashes like that, restart it

[noahmclean]

Sent you a DM

[bowring]

Thanks. It turns out a few of the Triton files have empty lines at the end labeled with a cycle number and that was not considered in the parser.

Fixed in v0.5.5