Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Is Alevin mode still supported? -- Simulating from Alevin or CellRanger run #16

Open
ColeWunderlich opened this issue Jan 19, 2021 · 0 comments

Comments

@ColeWunderlich
Copy link

Hello,

After looking at some of the previous issues, it was unclear to me if Alevin mode is still supported (ie to use the results from Alevin instead of splatter to seed the simulation). If it is still supported, I was wondering if there are current instructions for running using Alevin mode as the latest I could find were from a year ago.

In general, I was hoping to use the results of an Alevin or CellRanger run to seed the simulation instead of a synthetic matrix from splatter.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant