Ac_species_abundance_boxplot.pdf
Arg_biosyn_pathway_plots.pdf
C_acnes_AAT83849_vs_C_acnes_mgx_scatter.pdf
C_acnes_AAT83849_vs_C_granulosum_mgx_scatter.pdf
C_acnes_mtx_vs_C_gran_mgx_Ch_corr_volcano.pdf
M_res_DNF11_2196_vs_C_acnes_mgx_scatter.pdf
M_res_DNF11_2196_vs_M_res_mgx_scatter.pdf
M_res_abun_vs_C_acnes_abun_scatter.pdf
M_res_mtx_vs_C_acnes_mgx_Sc_corr_volcano.pdf
M_restricta_Sc_Ch_DE_NES_KEGG.pdf
M_restricta_Sc_Ch_DE_volcano.pdf
OG_Ch_vs_Vf_DE_volcano.pdf
OG_Tw_vs_Vf_DE_volcano.pdf
RNA_OG_pearson_boxplot.pdf
RNA_kraken_sorensen_boxplot.pdf
S_epi_DE_tally_barplot.pdf
S_epi_Seb_vs_invitro_NES_plot.pdf
S_epi_Tw_vs_all_OS_GSEA_slim_NES_barplot.pdf
S_epi_Tw_vs_all_log_phase_GSEA_slim_NES_barplot.pdf
Supp_between_site_GSEA_NES_plots.pdf
Tw_vs_all_OS_l2fc_Cu_ion_binding_barplot.pdf
Tw_vs_all_log_phase_l2fc_metal_ion_clust_barplot.pdf
all_studies_hg38_prop_boxplot.pdf
bacteria_species_transcriptional_activity.pdf
beta_ox_pathway_plots.pdf
contributional_diversity.pdf
core_common_taxa_RNA_v_DNA.pdf
full_cohort_mtx_rRNA_stats.pdf
fungal_species_transcriptional_activity.pdf
galactose_deg_pathway_plots.pdf
genomic_region_RNA_mapping_M_globosa_plot.pdf
hmm_AM_species_heatmap.pdf
immune_S_cap_clr_Ch_corr.pdf
invivo_invitro_PCA_batch_corrected.pdf
invivo_invitro_PCA_batch_corrected_zoomed.pdf
invivo_invitro_in_house_PCA.pdf
lacticin481_presence_clr_boxplot.pdf
lacticin481_presence_rna_k2_counts_boxplot.pdf
lactococcin972_AA_heatmaps.pdf
main_cohort_dv200_boxplot.pdf
main_cohort_hg38_read_pairs_boxplot.pdf
mgx_corr_contam_heatmap.pdf
mgx_read_stats_boxplot.pdf
mgx_taxa_balloon_plot.pdf
microbial_Sc_vs_Ch_DE_tally_barplot.pdf
mtx_mgx_non_human_percent.pdf
mtx_mgx_proportion_microbial_annotated.pdf
mtx_microbe_Ac_rarefaction.pdf
mtx_microbe_Ch_rarefaction.pdf
mtx_microbe_Sc_rarefaction.pdf
mtx_microbe_Tw_rarefaction.pdf
mtx_microbe_Vf_rarefaction.pdf
mtx_minimizer_microbe_ratio_plot.pdf
mtx_pathway_dominated_boxplot_padj.pdf
mtx_staphyloferrin_pathway_Tw_barplot.pdf
mtx_taxa_balloon_plot.pdf
pilot_cohort_mtx_vs_humann3_boxplot.pdf
ribo_deplete_versus_non_deplete.pdf
site_median_abun_barplot.pdf
staphyloferrin_Tw_pathway_vs_mtx_plot.pdf
thiopeptide_AA_heatmaps.pdf
thiopeptide_presence_C_acnes_clr.pdf
thiopeptide_presence_rna_k2_counts.pdf
trizol_vs_EZ1_species_DNA_corr.pdf
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