-
Notifications
You must be signed in to change notification settings - Fork 3
/
modelcodonsemiempirical.h
40 lines (32 loc) · 1014 Bytes
/
modelcodonsemiempirical.h
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
/*
* modelcodonsemiempirical.h
*
* Created on: May 29, 2013
* Author: minh
*/
#ifndef MODELCODONSEMIEMPIRICAL_H_
#define MODELCODONSEMIEMPIRICAL_H_
#include "modelcodonempirical.h"
#include "modelcodonparametric.h"
class ModelCodonSemiEmpirical: public ModelCodonEmpirical, public ModelCodonParametric {
public:
/**
constructor
@param model_name model name, e.g., GY,YN
@param freq state frequency type
@param tree associated phylogenetic tree
*/
ModelCodonSemiEmpirical(const char *model_name, string model_params, StateFreqType freq, string freq_params,
PhyloTree *tree, bool count_rates = true);
/**
* destructor
*/
virtual ~ModelCodonSemiEmpirical();
/**
initialization, called automatically by the constructor, no need to call it
@param model_name model name, e.g., JC, HKY.
@param freq state frequency type
*/
virtual void init(const char *model_name, string model_params, StateFreqType freq, string freq_params);
};
#endif /* MODELCODONSEMIEMPIRICAL_H_ */