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[Bug] hg38 fails in balsamic release 16.0.0 validation #1496

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mathiasbio opened this issue Oct 24, 2024 · 1 comment
Open

[Bug] hg38 fails in balsamic release 16.0.0 validation #1496

mathiasbio opened this issue Oct 24, 2024 · 1 comment
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@mathiasbio
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Description

cg command: cg workflow balsamic start --genome-version hg38 wgscase collects loqusdb and other references specifically for hg19 and adds to the case.

It should only collect reference files that are part of hg38.

Despite starting the case manually the analysis fails on multiple places. I copied the failed case to a folder to investigate after release: /home/proj/development/cancer/failed_cases/hg38_release16.0.0_failed

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@mathiasbio mathiasbio added the Bug Something isn't working label Oct 24, 2024
@github-project-automation github-project-automation bot moved this to Todo in BALSAMIC Oct 24, 2024
@mathiasbio mathiasbio mentioned this issue Oct 24, 2024
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@mathiasbio
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The reason is probably the same as mentioned in here #1425

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