[User Story] Support generating vcf files for upload to genotype for cases with only one normal sample

[beatrizsavinhas]

Need

As a production user,
I want balsamic to support generating vcf files for upload to genotype for cases with only one normal sample,
Because in the future WES normal samples will be uploaded to Genotype and when analysis are run in Normal only cases, a SNV.germline.tumor.dnascope.vcf.gz file is generate and stored but it does not include the genotype tag in housekeeper which is necessary for Genotype upload - therefore, normal only cases cannot currently be uploaded to Genotype.

Suggested approach

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Deviation

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System requirements assessed

• Yes, I have reviewed the system requirements

Requirements affected by this story

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Risk assessment needed

• Needed
• Not needed

Risk assessment

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SOUPs

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Anything else?

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