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[User Story] Keep both FOUND_IN variantcaller tags in merged variants #1518

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mathiasbio opened this issue Jan 10, 2025 · 0 comments
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@mathiasbio
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As a clinician I would like to see from which callers a variant has been called. Currently in release 16.0.0 of balsamic, when a variant is called by both TNscope and VarDict, only VarDict information remains. This is not correct, and leads to view of TNscope as primarily calling questionable / artefact variants as only those uniquely called by TNscope are labled as called by TNscope.

We need to update the merging method so at a minimum the information about which caller found the variant is retained.

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@mathiasbio mathiasbio added the User-Story A User-Story describing new functionality label Jan 10, 2025
@github-project-automation github-project-automation bot moved this to Todo in BALSAMIC Jan 10, 2025
@mathiasbio mathiasbio added this to the Release 17 milestone Jan 10, 2025
@mathiasbio mathiasbio self-assigned this Jan 10, 2025
@mathiasbio mathiasbio moved this from Todo to In Progress in BALSAMIC Jan 10, 2025
@mathiasbio mathiasbio linked a pull request Jan 10, 2025 that will close this issue
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@mathiasbio mathiasbio removed a link to a pull request Jan 20, 2025
56 tasks
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