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params not set in raredisease pipeline #27

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ziltonvasconcelos opened this issue Jan 2, 2025 · 0 comments
Open

params not set in raredisease pipeline #27

ziltonvasconcelos opened this issue Jan 2, 2025 · 0 comments

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@ziltonvasconcelos
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Description of the bug

I am using nf-core/sarek for a while and started to try raredisease now! But when I´ve run for the first time I received the error below....Anyone can help me? Thanks a lot!

params.variant_consequences_snv not set.
params.variant_consequences_sv not set.
params.ploidy_model not set.
params.gcnvcaller_model not set.
params.readcount_intervals not set.
params.mobile_element_references not set.
params.mobile_element_svdb_annotations not set.

my command was:

nextflow run nf-core/raredisease --input /home/zvasconcelos/data/raredisease_run/samplesheet_raredisease.csv -profile azurebatch -c /home/zvasconcelos/azure.config.brazil.supernew.big.raredisease -w 'az://genomas-raros/work' --outdir 'az://genomas-raros/results/'

Command used and terminal output

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Relevant files

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System information

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