Use scout to export Exons for chanjo

[moonso]

See also #642

[moonso]

This is blocked at the moment since we are not sure how to define the exon boundaries

[robinandeer]

Here's the code for parsing Biomart output including the URL to generate it in the first place.

I parse out the UTR regions and store everything in a dict with each of the exons as a key with a list of transcripts/genes appended to it.

parse-ensembl-exons.zip

We also need to double check that the total number of exons is roughly the same as what we already have in Chanjo!

[moonso]

This is more of a Chanjo issue. We will add functionality to export exon definitions from Scout. New issue is open in chanjo

[moonso]

We will add exons and a cli command for exporting those

[dnil]

Done with #1295?

[moonso]

Yes