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DESCRIPTION
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Package: mFD
Title: Compute and Illustrate the Multiple Facets of Functional Diversity
Version: 1.0.7.9000
Authors@R: c(
person(given = "Camille",
family = "Magneville",
email = "camille.magneville@gmail.com",
role = c("aut", "cre", "cph"),
comment = c(ORCID = "0000-0003-0489-3822")),
person(given = "Nicolas",
family = "Loiseau",
email = "nicolas.loiseau1@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0002-2469-1980")),
person(given = "Camille",
family = "Albouy",
email = "albouycamille@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0003-1629-2389")),
person(given = "Nicolas",
family = "Casajus",
email = "nicolas.casajus@fondationbiodiversite.fr",
role = "aut",
comment = c(ORCID = "0000-0002-5537-5294")),
person(given = "Thomas",
family = "Claverie",
email = "tclaverie@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0002-6258-4991")),
person(given = "Arthur",
family = "Escalas",
email = "arthur.escalas@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0002-6450-5716")),
person(given = "Fabien",
family = "Leprieur",
email = "fabien.leprieur@umontpellier.fr",
role = "aut",
comment = c(ORCID = "0000-0001-6869-342X")),
person(given = "Eva",
family = "Maire",
email = "emg.maire@gmail.com",
role = "aut",
comment = c(ORCID = "0000-0002-1032-3394")),
person(given = "David",
family = "Mouillot",
email = "david.mouillot@umontpellier.fr",
role = "aut",
comment = c(ORCID = "0000-0003-0402-2605")),
person(given = "Sebastien",
family = "Villeger",
email = "sebastien.villeger@cnrs.fr",
role = "aut",
comment = c(ORCID = "0000-0002-2362-7178")))
Description: Computing functional traits-based distances between pairs of
species for species gathered in assemblages allowing to build several
functional spaces. The package allows to compute functional diversity
indices assessing the distribution of species (and of their dominance) in a
given functional space for each assemblage and the overlap between
assemblages in a given functional space, see: Chao et al. (2018)
<doi:10.1002/ecm.1343>, Maire et al. (2015) <doi:10.1111/geb.12299>,
Mouillot et al. (2013) <doi:10.1016/j.tree.2012.10.004>, Mouillot et al.
(2014) <doi:10.1073/pnas.1317625111>, Ricotta and Szeidl (2009)
<doi:10.1016/j.tpb.2009.10.001>. Graphical outputs are included.
Visit the 'mFD' website for more information, documentation and examples.
URL: https://cmlmagneville.github.io/mFD/, https://github.com/CmlMagneville/mFD
BugReports: https://github.com/CmlMagneville/mFD/issues
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports:
ade4,
ape,
betapart (>= 1.5.4),
cluster,
dendextend,
FactoMineR,
gawdis,
geometry,
ggplot2,
ggrepel,
grid,
Hmisc,
patchwork (>= 1.2.0),
reshape2,
rstatix,
stats,
utils,
vegan
Suggests:
dplyr (>= 1.0.6),
knitr,
magrittr,
rmarkdown (>= 2.6),
stringr,
tibble,
tidyr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr