Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add pruning for incomplete or malformed tips #37

Open
petermr opened this issue Aug 17, 2015 · 0 comments
Open

Add pruning for incomplete or malformed tips #37

petermr opened this issue Aug 17, 2015 · 0 comments
Assignees

Comments

@petermr
Copy link
Member

petermr commented Aug 17, 2015

All successful parses will results in

<genus> <species> <strain> <egid>

These are then further validated via lookup to remove cases where

<genus+species> != <binomial looked up from egid>

all tips failing these tests should be pruned from the tree used for further processing ("validTree"). (The incorrect otus can be retained but not used).

@petermr petermr self-assigned this Aug 17, 2015
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant