tbx_cfg_USwLesion.m

function USwLtools = tbx_cfg_USwLesion
% MATLABBATCH Configuration file for toolbox 'USwL', i.e. 'Unified 
% segmentation with lesion'.
% 
% More details (and updates) can be found on:
% https://github.com/CyclotronResearchCentre/USwLesion
%_______________________________________________________________________
% Copyright (C) 2015 Cyclotron Research Centre

% Written by C. Phillips.
% Cyclotron Research Centre, University of Liege, Belgium

if ~isdeployed,
    addpath(fullfile(spm('Dir'),'toolbox','USwLesion'));
end

%----------------------------------------------------------------------
% Setting up 'Utils' modules
%----------------------------------------------------------------------
USwLutils         = cfg_choice;
USwLutils.tag     = 'USwLutils';
USwLutils.name    = 'US with Lesion Utilities';
USwLutils.help    = {'Some utility functions for the US-with-Lesion tools.'
        }';
USwLutils.values  = { ... Fixing
    tbx_scfg_Utils_FxLesMsk ... % lesion mask (small blobs + intensities)
    tbx_scfg_Utils_FxMPM ...    % qMRI/MPM, capping values [0 Max]
    tbx_scfg_Utils_FxICVmsk ... % ICV mask
    tbx_scfg_ParEx}; % Extracting parameters.

%----------------------------------------------------------------------
% Setting up main choices
%----------------------------------------------------------------------
USwLtools         = cfg_choice;
USwLtools.tag     = 'USwLtools';
USwLtools.name    = 'US with Lesion Tools';
USwLtools.help    = {
    ['Tools for the segmentation of MR images with lesions ',...
    'based on the ''unified segementation'' approach.']
    ['One need to provide an (approximate) mask of the lesioned area(s)',...
    'in order to use this tool!']
    }';
USwLtools.values  = {tbx_scfg_USwL tbx_scfg_MPMsmooth USwLutils};

end