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graph.c
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graph.c
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#ifndef __GRAPH_C
#define __GRAPH_C
#include <unistd.h>
#include <errno.h>
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <sys/mman.h>
#include <fcntl.h>
#include <assert.h>
#include <time.h>
#include <pthread.h>
#include <libgen.h>
#include "paragrapher.h"
#include "omp.c"
// 4 Bytes ID per vertex, without weights on edges or vertices
struct ll_400_graph
{
unsigned long vertices_count;
unsigned long edges_count;
unsigned long* offsets_list;
unsigned int* edges_list;
};
// 4 Bytes ID per vertex, 4 Bytes weight per edge, with no weight on vertices
// Each edge has two unsigned int elements in the edges_list,
// The first one is the destination/source, and
// The second one is the weight
struct ll_404_graph
{
unsigned long vertices_count;
unsigned long edges_count;
unsigned long* offsets_list;
unsigned int* edges_list;
};
// 8 Bytes IDs per vertex, without weights on edges or vertices
struct ll_800_graph
{
unsigned long vertices_count;
unsigned long edges_count;
unsigned long* offsets_list;
unsigned long* edges_list;
};
void print_ll_400_graph(struct ll_400_graph* ret)
{
printf("\n|V|: %'20lu\n|E|: %'20lu\n", ret->vertices_count, ret->edges_count);
printf("First offsets: ");
for(unsigned int v=0; v<min(ret->vertices_count + 1, 20); v++)
printf("%lu, ", ret->offsets_list[v]);
if(ret->vertices_count > 20)
{
printf("...\nLast offsets: ... ");
for(unsigned int v = ret->vertices_count - 20; v <= ret->vertices_count; v++)
printf(", %lu", ret->offsets_list[v]);
}
if(ret->edges_list)
{
printf("\nFirst edges: ");
for(unsigned long e=0; e<min(ret->edges_count, 20); e++)
printf("%u, ", ret->edges_list[e]);
if(ret->edges_count > 20)
{
printf(" ...\nLast edges: ... ");
for(unsigned long e = ret->edges_count - 20; e < ret->edges_count; e++)
printf(", %u", ret->edges_list[e]);
}
}
printf("\n\n");
return;
}
char* get_shm_graph_name(char* file_name)
{
assert(file_name != NULL);
char* cfn = NULL;
if(access(file_name, F_OK) == 0 )
// for .txt graphs
cfn = file_name;
else
{
// for unweighted WebGraph graphs with .graph suffix
cfn = malloc(PATH_MAX);
assert(cfn != NULL);
sprintf(cfn, "%s.graph", file_name);
if(access(cfn, F_OK) != 0)
{
// for weighted WebGraph graphs with .labels suffix
sprintf(cfn, "%s.labels", file_name);
int ra = access(cfn, F_OK);
assert(ra == 0);
}
}
char* abs_file_name = malloc(PATH_MAX);
assert(abs_file_name != NULL);
{
char* ret = realpath(cfn, abs_file_name);
assert(ret != NULL && ret == abs_file_name);
}
int len = strlen(abs_file_name);
char* ret = malloc(len + 16);
assert(ret != NULL);
sprintf(ret, "ll_graph%s", abs_file_name);
for(int i = 8; i <= 8 + len; i++)
if(ret[i] == '/')
ret[i] = '_';
free(abs_file_name);
abs_file_name = NULL;
if(cfn != file_name)
{
free(cfn);
cfn = NULL;
}
return ret;
}
struct ll_400_graph* get_shm_ll_400_graph(char* file_name, unsigned long vertices_count, unsigned long edges_count)
{
char* shm_name = get_shm_graph_name(file_name);
printf("shm_name: %s\n", shm_name);
unsigned long graph_size = (2 + vertices_count + 1) * sizeof(unsigned long) + edges_count * sizeof(unsigned int);
struct ll_400_graph* g = NULL;
int shm_fd = shm_open(shm_name, O_RDONLY, 0);
if(shm_fd > 0)
{
printf("Shared memory file exists.\n");
unsigned long* ul_graph = (unsigned long*)mmap(NULL, graph_size, PROT_READ, MAP_PRIVATE, shm_fd, 0);
if(ul_graph == MAP_FAILED)
{
printf("Couldn't get graph -> mmap error : %d, %s\n", errno, strerror(errno) );
assert (ul_graph != MAP_FAILED);
}
close(shm_fd);
shm_fd = -1;
g = malloc(sizeof(struct ll_400_graph));
assert(g != NULL);
g->vertices_count = ul_graph[0];
g->edges_count = ul_graph[1];
g->offsets_list = &ul_graph[2];
g->edges_list = (unsigned int*)(&ul_graph[ 2 + ul_graph[0] + 1 ]);
}
// Release mem
free(shm_name);
shm_name = NULL;
return g;
}
/*
`flags`:
bit 0:
Read from storage. Do not use the copy in /dev/shm (if it exists).
bit 31:
Will be set by the function if the graph has been mapped from a copy in /dev/shm.
This flag should be used for releasing the graph. If it is set, `release_shm_ll_400_graph()` should be called.
Otherwise, `release_numa_interleaved_ll_400_graph()` should be called.
*/
struct ll_400_graph* get_ll_400_txt_graph(char* file_name, unsigned int* flags)
{
// Checks
assert(flags != NULL);
if(access(file_name, F_OK) != 0)
{
printf("Error: file \"%s\" does not exist\n",file_name);
return NULL;
}
// Reading vertices and edges count and graph size
unsigned long vertices_count = 0;
unsigned long edges_count = 0;
{
char temp[512];
sprintf(temp, "head -n1 %s", file_name);
FILE *fp = popen(temp, "r");
int ret = fscanf(fp, "%lu", &vertices_count);
assert(ret == 1);
pclose(fp);
printf("Vertices: %'lu\n",vertices_count);
sprintf(temp, "head -n2 %s | tail -n1", file_name);
fp = popen(temp, "r");
ret = fscanf(fp, "%lu", &edges_count);
assert(ret == 1);
pclose(fp);
printf("Edges: %'lu\n",edges_count);
}
// Check if the graph exists in /dev/shm
if((*flags & 1U<<0) == 0)
{
struct ll_400_graph* g = get_shm_ll_400_graph(file_name, vertices_count, edges_count);
if(g != NULL)
{
assert(vertices_count == g->vertices_count);
assert(edges_count == g->edges_count);
print_ll_400_graph(g);
*flags |= 1U<<31;
return g;
}
}
// Allocate memory
struct ll_400_graph* g =calloc(sizeof(struct ll_400_graph),1);
assert(g != NULL);
g->vertices_count = vertices_count;
g->edges_count = edges_count;
g->offsets_list = numa_alloc_interleaved(sizeof(unsigned long) * (1 + g->vertices_count));
assert(g->offsets_list != NULL);
g->edges_list = numa_alloc_interleaved(sizeof(unsigned int) * g->edges_count);
assert(g->edges_list != NULL);
// Reading graph from disk
{
int fd=open(file_name, O_RDONLY | O_DIRECT);
if(fd<0)
{
printf("Can't open the file: %d - %s\n",errno,strerror(errno));
return NULL;
}
unsigned long buf_size=4096UL * 1024 * 24;
char* buf=malloc(sizeof(char)*buf_size);
assert(buf != NULL);
char* main_buff_address = buf;
// 4096 alignment of buf for O_DIRECT
if((unsigned long)buf % 4096)
{
unsigned long excess = 4096 - (unsigned long)buf % 4096 ;
buf = (char*)((unsigned long)buf + excess);
buf_size -= 4096;
}
long count=-1;
unsigned long val=0;
unsigned int val_length=0;
unsigned int status=0;
unsigned long t1=get_nano_time();
unsigned long vl_count=0;
unsigned long el_count=0;
unsigned long total_read_bytes = 0;
while((count=read(fd, buf, buf_size)) > 0)
{
total_read_bytes += count;
int i=0;
while(i<count)
{
//if(i<50) printf("status: %d, v: %c\n",status,buf[i]);
if(buf[i]!='\n' && buf[i]!=' ')
{
val = val * 10 + (buf[i]-'0');
val_length++;
}
else if(val_length)
{
switch(status)
{
case 0:
assert(vertices_count == val);
break;
case 1:
assert(edges_count == val);
break;
case 2:
g->offsets_list[vl_count++]=val;
break;
case 3:
assert(val < (1UL<<32));
g->edges_list[el_count++]=val;
break;
}
val=0;
val_length=0;
}
if(buf[i] == '\n')
status++;
i++;
}
}
assert(count >= 0);
assert(el_count == edges_count);
assert(vl_count == vertices_count);
free(main_buff_address);
main_buff_address = NULL;
buf = NULL;
close(fd);
fd = -1;
g->offsets_list[g->vertices_count]=g->edges_count;
printf("Reading %'.1f (MB) completed in %'.3f (seconds)\n", total_read_bytes/1e6, (get_nano_time() - t1)/1e9);
}
// Printing the first vals in the read graph
print_ll_400_graph(g);
// Flush the OS cache
flush_os_cache();
*flags &= ~(1U<<31);
return g;
}
void __ll_400_webgraph_callback(paragrapher_read_request* req, paragrapher_edge_block* eb, void* in_offsets, void* in_edges, void* buffer_id, void* in_args)
{
void** args = (void**) in_args;
unsigned long* completed_callbacks_count = (unsigned long*)args[0];
unsigned int* graph_edges = (unsigned int*)args[1];
unsigned long* offsets = (unsigned long*)in_offsets;
unsigned long ec = offsets[eb->end_vertex] + eb->end_edge - offsets[eb->start_vertex] - eb->start_edge;
unsigned long dest_off = offsets[eb->start_vertex] + eb->start_edge;
unsigned long* ul_in_edges = (unsigned long*)in_edges;
// No need to parallelize this loop as multiple instances of this callback are concurrently called by the ParaGrapher
for(unsigned long e = 0; e < ec; e++, dest_off++)
graph_edges[dest_off] = (unsigned int)ul_in_edges[e];
paragrapher_csx_release_read_buffers(req, eb, buffer_id);
__atomic_add_fetch(completed_callbacks_count, 1UL, __ATOMIC_RELAXED);
return;
}
/*
`flags`:
bit 0:
Read from storage. Do not use the copy in /dev/shm (if it exists).
bit 31:
Will be set by the function if the graph has been mapped from a copy in /dev/shm.
This flag should be used for releasing the graph. If it is set, `release_shm_ll_400_graph()` should be called.
Otherwise, `release_numa_interleaved_ll_400_graph()` should be called.
*/
struct ll_400_graph* get_ll_400_webgraph(char* file_name, char* type, unsigned int* flags)
{
// Opening the graph
unsigned long t1=get_nano_time();
int ret = paragrapher_init();
assert(ret == 0);
paragrapher_graph_type pgt;
/*
We should use PARAGRAPHER_CSX_WG_400_AP for PARAGRAPHER_CSX_WG_400_AP graphs but they can
aslo be read by PARAGRAPHER_CSX_WG_800_AP. So, to support all graphs with |V| <= 2 ^ 32,
we read all of them by PARAGRAPHER_CSX_WG_800_AP.
*/
if(!strcmp(type, "PARAGRAPHER_CSX_WG_400_AP") || !strcmp(type, "PARAGRAPHER_CSX_WG_800_AP"))
pgt = PARAGRAPHER_CSX_WG_800_AP;
else
{
assert(0 && "get_ll_400_webgraph does not work for this type of graph.");
return NULL;
}
paragrapher_graph* graph = paragrapher_open_graph(file_name, pgt, NULL, 0);
assert(graph != NULL);
unsigned long vertices_count = 0;
unsigned long edges_count = 0;
{
void* op_args []= {&vertices_count, &edges_count};
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_GET_VERTICES_COUNT, op_args, 1);
assert (ret == 0);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_GET_EDGES_COUNT, op_args + 1, 1);
assert (ret == 0);
printf("Vertices: %'lu\n",vertices_count);
printf("Edges: %'lu\n",edges_count);
if(vertices_count >= (1UL << 32))
{
assert(0 && "get_ll_400_webgraph() supports reading webgraphs with 4 Bytes ID per vertex.\n");
return NULL;
}
// val = 1UL << (unsigned int)(log(edges_count)/log(2) - 3);
// op_args[0] = &val;
// ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_SET_BUFFER_SIZE, op_args, 1);
// assert (ret == 0);
}
// Check if the graph exists in /dev/shm
if((*flags & 1U<<0) == 0)
{
struct ll_400_graph* g = get_shm_ll_400_graph(file_name, vertices_count, edges_count);
if(g != NULL)
{
assert(vertices_count == g->vertices_count);
assert(edges_count == g->edges_count);
print_ll_400_graph(g);
*flags |= 1U<<31;
return g;
}
}
// Allocating memory
struct ll_400_graph* g =calloc(sizeof(struct ll_400_graph),1);
assert(g != NULL);
g->vertices_count = vertices_count;
g->edges_count = edges_count;
g->offsets_list = numa_alloc_interleaved(sizeof(unsigned long) * (1 + g->vertices_count));
assert(g->offsets_list != NULL);
g->edges_list = numa_alloc_interleaved(sizeof(unsigned int) * g->edges_count);
assert(g->edges_list != NULL);
// Writing offsets
{
unsigned long* offsets = (unsigned long*)paragrapher_csx_get_offsets(graph, NULL, 0, -1UL, NULL, 0);
assert(offsets != NULL);
for(unsigned long v = 0; v <= vertices_count; v++)
g->offsets_list[v] = offsets[v];
paragrapher_csx_release_offsets_weights_arrays(graph, offsets);
offsets = NULL;
}
// Reading edges
{
unsigned long completed_callbacks_count = 0;
void* callback_args[] = {(void*)&completed_callbacks_count, (void*)g->edges_list};
paragrapher_edge_block eb;
eb.start_vertex = 0;
eb.start_edge=0;
eb.end_vertex = -1UL;
eb.end_edge= -1UL;
paragrapher_read_request* req= paragrapher_csx_get_subgraph(graph, &eb, NULL, NULL, __ll_400_webgraph_callback, (void*)callback_args, NULL, 0);
assert(req != NULL);
struct timespec ts = {0, 200 * 1000 * 1000};
long status = 0;
unsigned long read_edges = 0;
unsigned long callbacks_count = 0;
void* op0_args []= {req, &status};
void* op1_args []= {req, &read_edges};
void* op2_args []= {req, &callbacks_count};
unsigned long next_edge_limit_print = 0;
do
{
nanosleep(&ts, NULL);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_STATUS, op0_args, 2);
assert (ret == 0);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_EDGES, op1_args, 2);
assert (ret == 0);
if(callbacks_count == 0)
{
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_TOTAL_CALLBACKS, op2_args, 2);
assert (ret == 0);
}
if(read_edges >= next_edge_limit_print)
{
printf(" Reading ..., status: %'ld, read_edges: %'15lu (%.1f%%), completed callbacks: %'lu/%'lu .\n", status, read_edges, 100.0 *read_edges/edges_count, completed_callbacks_count, callbacks_count);
next_edge_limit_print = read_edges + 0.05 * edges_count;
}
}
while(status == 0);
// printf(" Reading graph finished, status: %'ld, read_edges: %'lu, completed callbacks: %'u/%'u .\n", status, read_edges, completed_callbacks_count, callbacks_count);
// Waiting for all buffers to be processed
while(completed_callbacks_count < callbacks_count)
{
nanosleep(&ts, NULL);
// printf(" Waiting for callbacks ..., completed callbacks: %'u/%'u .\n", completed_callbacks_count, callbacks_count);
}
// Releasing the req
paragrapher_csx_release_read_request(req);
req = NULL;
}
// Releasing the paragrapher graph
ret = paragrapher_release_graph(graph, NULL, 0);
assert(ret == 0);
graph = NULL;
printf("Reading completed in %'.3f (seconds)\n", (get_nano_time() - t1)/1e9);
// Printing the first vals in the read graph
print_ll_400_graph(g);
// Flush the OS cache
flush_os_cache();
*flags &= ~(1U<<31);
return g;
}
struct ll_404_graph* get_shm_ll_404_graph(char* file_name, unsigned long vertices_count, unsigned long edges_count)
{
char* shm_name = get_shm_graph_name(file_name);
printf("shm_name: %s\n", shm_name);
unsigned long graph_size = (2 + vertices_count + 1) * sizeof(unsigned long) + 2UL * edges_count * sizeof(unsigned int);
struct ll_404_graph* g = NULL;
int shm_fd = shm_open(shm_name, O_RDONLY, 0);
if(shm_fd > 0)
{
printf("Shared memory file exists.\n");
unsigned long* ul_graph = (unsigned long*)mmap(NULL, graph_size, PROT_READ, MAP_PRIVATE, shm_fd, 0);
if(ul_graph == MAP_FAILED)
{
printf("Couldn't get graph -> mmap error : %d, %s\n", errno, strerror(errno) );
assert (ul_graph != MAP_FAILED);
}
close(shm_fd);
shm_fd = -1;
g = malloc(sizeof(struct ll_404_graph));
assert(g != NULL);
g->vertices_count = ul_graph[0];
g->edges_count = ul_graph[1];
g->offsets_list = &ul_graph[2];
g->edges_list = (unsigned int*)(&ul_graph[ 2 + ul_graph[0] + 1 ]);
}
// Release mem
free(shm_name);
shm_name = NULL;
return g;
}
void __ll_404_webgraph_callback(paragrapher_read_request* req, paragrapher_edge_block* eb, void* in_offsets, void* in_edges, void* buffer_id, void* in_args)
{
void** args = (void**) in_args;
unsigned long* completed_callbacks_count = (unsigned long*)args[0];
// Each edge has 4-Bytes for vertex ID and 4-Bytes for edge weight, we copy the 8-Bytes together
unsigned long* graph_edges = (unsigned long*)args[1];
unsigned long* offsets = (unsigned long*)in_offsets;
unsigned long ec = offsets[eb->end_vertex] + eb->end_edge - offsets[eb->start_vertex] - eb->start_edge;
unsigned long dest_off = offsets[eb->start_vertex] + eb->start_edge;
unsigned long* ul_in_edges = (unsigned long*)in_edges;
// No need to parallelize this loop as multiple instances of this callback are concurrently called by the ParaGrapher
for(unsigned long e = 0; e < ec; e++, dest_off++)
graph_edges[dest_off] = ul_in_edges[e];
paragrapher_csx_release_read_buffers(req, eb, buffer_id);
__atomic_add_fetch(completed_callbacks_count, 1UL, __ATOMIC_RELAXED);
return;
}
/*
`flags`:
bit 0:
Read from storage. Do not use the copy in /dev/shm (if it exists).
bit 31:
Will be set by the function if the graph has been mapped from a copy in /dev/shm.
This flag should be used for releasing the graph. If it is set, `release_shm_ll_404_graph()` should be called.
Otherwise, `release_numa_interleaved_ll_404_graph()` should be called.
*/
struct ll_404_graph* get_ll_404_webgraph(char* file_name, char* type, unsigned int* flags)
{
// Opening graph
unsigned long t1=get_nano_time();
int ret = paragrapher_init();
assert(ret == 0);
paragrapher_graph_type pgt;
if(!strcmp(type, "PARAGRAPHER_CSX_WG_404_AP"))
pgt = PARAGRAPHER_CSX_WG_404_AP;
else
{
assert(0 && "get_ll_404_webgraph does not work for this type of graph.");
return NULL;
}
paragrapher_graph* graph = paragrapher_open_graph(file_name, pgt, NULL, 0);
assert(graph != NULL);
unsigned long vertices_count = 0;
unsigned long edges_count = 0;
{
void* op_args []= {&vertices_count, &edges_count};
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_GET_VERTICES_COUNT, op_args, 1);
assert (ret == 0);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_GET_EDGES_COUNT, op_args + 1, 1);
assert (ret == 0);
printf("Vertices: %'lu\n",vertices_count);
printf("Edges: %'lu\n",edges_count);
// val = 1UL << (unsigned int)(log(edges_count)/log(2) - 3);
// op_args[0] = &val;
// ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_SET_BUFFER_SIZE, op_args, 1);
// assert (ret == 0);
}
// Check if the graph exists in /dev/shm
if((*flags & 1U<<0) == 0)
{
struct ll_404_graph* g = get_shm_ll_404_graph(file_name, vertices_count, edges_count);
if(g != NULL)
{
assert(vertices_count == g->vertices_count);
assert(edges_count == g->edges_count);
print_ll_400_graph((struct ll_400_graph*)g);
*flags |= 1U<<31;
return g;
}
}
// Allocating memory
struct ll_404_graph* g =calloc(sizeof(struct ll_404_graph),1);
assert(g != NULL);
g->vertices_count = vertices_count;
g->edges_count = edges_count;
g->offsets_list = numa_alloc_interleaved(sizeof(unsigned long) * (1 + g->vertices_count));
assert(g->offsets_list != NULL);
g->edges_list = numa_alloc_interleaved(2UL * sizeof(unsigned int) * g->edges_count);
assert(g->edges_list != NULL);
// Writing offsets
{
unsigned long* offsets = (unsigned long*)paragrapher_csx_get_offsets(graph, NULL, 0, -1UL, NULL, 0);
assert(offsets != NULL);
for(unsigned long v = 0; v <= vertices_count; v++)
g->offsets_list[v] = offsets[v];
paragrapher_csx_release_offsets_weights_arrays(graph, offsets);
offsets = NULL;
}
// Reading edges
{
unsigned long completed_callbacks_count = 0;
void* callback_args[] = {(void*)&completed_callbacks_count, (void*)g->edges_list};
paragrapher_edge_block eb;
eb.start_vertex = 0;
eb.start_edge=0;
eb.end_vertex = -1UL;
eb.end_edge= -1UL;
paragrapher_read_request* req= paragrapher_csx_get_subgraph(graph, &eb, NULL, NULL, __ll_404_webgraph_callback, (void*)callback_args, NULL, 0);
assert(req != NULL);
struct timespec ts = {0, 200 * 1000 * 1000};
long status = 0;
unsigned long read_edges = 0;
unsigned long callbacks_count = 0;
void* op0_args []= {req, &status};
void* op1_args []= {req, &read_edges};
void* op2_args []= {req, &callbacks_count};
unsigned long next_edge_limit_print = 0;
do
{
nanosleep(&ts, NULL);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_STATUS, op0_args, 2);
assert (ret == 0);
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_EDGES, op1_args, 2);
assert (ret == 0);
if(callbacks_count == 0)
{
ret = paragrapher_get_set_options(graph, PARAGRAPHER_REQUEST_READ_TOTAL_CALLBACKS, op2_args, 2);
assert (ret == 0);
}
if(read_edges >= next_edge_limit_print)
{
printf(" Reading ..., status: %'ld, read_edges: %'15lu (%.1f%%), completed callbacks: %'lu/%'lu .\n", status, read_edges, 100.0 *read_edges/edges_count, completed_callbacks_count, callbacks_count);
next_edge_limit_print = read_edges + 0.05 * edges_count;
}
}
while(status == 0);
// printf(" Reading graph finished, status: %'ld, read_edges: %'lu, completed callbacks: %'u/%'u .\n", status, read_edges, completed_callbacks_count, callbacks_count);
// Waiting for all buffers to be processed
while(completed_callbacks_count < callbacks_count)
{
nanosleep(&ts, NULL);
// printf(" Waiting for callbacks ..., completed callbacks: %'u/%'u .\n", completed_callbacks_count, callbacks_count);
}
// Releasing the req
paragrapher_csx_release_read_request(req);
req = NULL;
}
// Releasing the paragrapher graph
ret = paragrapher_release_graph(graph, NULL, 0);
assert(ret == 0);
graph = NULL;
printf("Reading completed in %'.3f (seconds)\n", (get_nano_time() - t1)/1e9);
// Printing the first vals in the read graph
print_ll_400_graph((struct ll_400_graph*)g);
// Flush the OS cache
flush_os_cache();
*flags &= ~(1U<<31);
return g;
}
/*
flags:
bit 0: Directly use `file_name` without calling `get_shm_graph_name()`.
*/
int store_shm_ll_400_graph(struct par_env* pe, char* file_name, struct ll_400_graph* g, unsigned int flags)
{
assert(file_name != NULL && g != NULL);
int ret = -1;
char* shm_name;
if(flags & 1U)
shm_name = file_name;
else
shm_name = get_shm_graph_name(file_name);
unsigned long graph_size = (2 + g->vertices_count + 1) * sizeof(unsigned long) + g->edges_count * sizeof(unsigned int);
unsigned long* sg = create_shm(shm_name, graph_size);
if(sg != NULL)
{
numa_interleave_allocated_memory(sg, graph_size);
sg[0] = g->vertices_count;
sg[1] = g->edges_count;
#pragma omp parallel for
for(unsigned int v=0; v <= g->vertices_count; v++)
sg[2 + v] = g->offsets_list[v];
unsigned int* sg_edges =(unsigned int*)(sg + 2 + g->vertices_count + 1);
#pragma omp parallel for
for(unsigned long e=0; e < g->edges_count; e++)
sg_edges[e] = g->edges_list[e];
int ret = msync(sg, graph_size, MS_SYNC);
assert(ret == 0);
munmap(sg, graph_size);
sg = NULL;
{
int shm_fd = shm_open(shm_name, O_RDONLY, 0);
int r0 = fchmod(shm_fd, S_IRUSR|S_IRGRP|S_IROTH);
assert(r0 == 0);
close(shm_fd);
shm_fd = -1;
}
ret = 0;
}
if(shm_name != file_name)
{
free(shm_name);
shm_name = NULL;
}
return ret;
}
int store_shm_ll_404_graph(struct par_env* pe, char* file_name, struct ll_404_graph* g, unsigned int flags)
{
assert(file_name != NULL && g != NULL);
int ret = -1;
char* shm_name;
if(flags & 1U)
shm_name = file_name;
else
shm_name = get_shm_graph_name(file_name);
unsigned long graph_size = (2 + g->vertices_count + 1) * sizeof(unsigned long) + 2UL * g->edges_count * sizeof(unsigned int);
unsigned long* sg = create_shm(shm_name, graph_size);
if(sg != NULL)
{
numa_interleave_allocated_memory(sg, graph_size);
sg[0] = g->vertices_count;
sg[1] = g->edges_count;
#pragma omp parallel for
for(unsigned int v=0; v <= g->vertices_count; v++)
sg[2 + v] = g->offsets_list[v];
unsigned int* sg_edges =(unsigned int*)(sg + 2 + g->vertices_count + 1);
#pragma omp parallel for
for(unsigned long e=0; e < 2UL * g->edges_count; e++)
sg_edges[e] = g->edges_list[e];
int ret = msync(sg, graph_size, MS_SYNC);
assert(ret == 0);
munmap(sg, graph_size);
sg = NULL;
{
int shm_fd = shm_open(shm_name, O_RDONLY, 0);
int r0 = fchmod(shm_fd, S_IRUSR|S_IRGRP|S_IROTH);
assert(r0 == 0);
close(shm_fd);
shm_fd = -1;
}
ret = 0;
}
if(shm_name != file_name)
{
free(shm_name);
shm_name = NULL;
}
return ret;
}
void delete_shm_graph_from(char* file_name)
{
assert(file_name != NULL);
char* shm_name = get_shm_graph_name(file_name);
int ret = shm_unlink(shm_name);
assert(ret == 0);
free(shm_name);
shm_name = NULL;
return;
}
void release_numa_interleaved_ll_400_graph(struct ll_400_graph* g)
{
assert(g!= NULL && g->offsets_list != NULL);
numa_free(g->offsets_list, sizeof(unsigned long)*(1 + g->vertices_count));
g->offsets_list = NULL;
if(g->edges_list)
{
numa_free(g->edges_list, sizeof(unsigned int) * g->edges_count);
g->edges_list = NULL;
}
free(g);
g = NULL;
return;
}
void release_shm_ll_400_graph(struct ll_400_graph* g)
{
assert(g != NULL);
assert( (void*)(g->offsets_list - 2) == (void*)(g->edges_list - 2 * (2 + g->vertices_count + 1)) );
unsigned long graph_size = (2 + g->vertices_count + 1) * sizeof(unsigned long) + g->edges_count * sizeof(unsigned int);
munmap(g->offsets_list - 2, graph_size);
g->offsets_list = NULL;
g->edges_list = NULL;
free(g);
g = NULL;
return;
}
void release_numa_interleaved_ll_800_graph(struct ll_800_graph* g)
{
assert(g!= NULL && g->offsets_list != NULL);
numa_free(g->offsets_list, sizeof(unsigned long)*(1 + g->vertices_count));
g->offsets_list = NULL;
if(g->edges_list)
{
numa_free(g->edges_list, sizeof(unsigned long) * g->edges_count);
g->edges_list = NULL;
}
free(g);
g = NULL;
return;
}
void release_numa_interleaved_ll_404_graph(struct ll_404_graph* g)
{
assert(g!= NULL && g->offsets_list != NULL);
numa_free(g->offsets_list, sizeof(unsigned long)*(1 + g->vertices_count));
g->offsets_list = NULL;
if(g->edges_list)
{
numa_free(g->edges_list, 2UL * sizeof(unsigned int) * g->edges_count);
g->edges_list = NULL;
}
free(g);
g = NULL;
return;
}
void release_shm_ll_404_graph(struct ll_404_graph* g)
{
assert(g != NULL);
assert( (void*)(g->offsets_list - 2) == (void*)(g->edges_list - 2 * (2 + g->vertices_count + 1)) );
unsigned long graph_size = (2 + g->vertices_count + 1) * sizeof(unsigned long) + 2 * g->edges_count * sizeof(unsigned int);
munmap(g->offsets_list - 2, graph_size);
g->offsets_list = NULL;
g->edges_list = NULL;
free(g);
g = NULL;
return;
}
#endif