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viz.yaml
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viz.yaml
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vizlab: "0.1"
info:
id: climate-fish-habitat
name: Shifts in fish habitat under climate change
date: 2016-05-12
publish-date: 2016-07-13
path: climate-change-walleye-bass
description: >-
Shifts in Wisconsin fish habitat due to climate change. Warming lakes are changing fish communities in Wisconsin: walleye populations are declining, while large mouth bass populations are increasing.
thumbnail:
url: images/thumbnail.png
alttext: Climate change and freshwater fish
thumbnail-landing:
url: images/thumbnail.png
alttext: Climate change and freshwater fish
pages:
-
id: index
template: layout/templates/index.mustache
sections: [header, intro, walleyeDecline, walleyeBass, lakeWarming, futureWarming, futureSuitability, fishManagement, footer]
context: siteTextData
sections:
-
id: header
template: layout/templates/header.mustache
context: siteTextData
-
id: externallink
template: layout/templates/externallink.mustache
context: siteTextData
-
id: intro
template: layout/templates/intro.mustache
context: siteTextData
-
id: walleyeDecline
template: layout/templates/walleyeDecline.mustache
context: siteTextData
depends:
- wallyTrendsFig
- bassTrendsFig
-
id: walleyeBass
template: layout/templates/walleyeBass.mustache
context: siteTextData
depends:
- fishGDDFig
-
id: lakeWarming
template: layout/templates/lakeWarming.mustache
context: siteTextData
-
id: futureWarming
template: layout/templates/futureWarming.mustache
context: siteTextData
-
id: futureSuitability
template: layout/templates/futureSuitability.mustache
context: siteTextData
depends:
- futureSuitabilityFig
- futureSuitabilityFigArea
-
id: fishManagement
template: layout/templates/fishManagement.mustache
context: siteTextData
-
id: footer
template: layout/templates/footer.mustache
context: siteTextData
data:
-
id: siteTextData
location: data/siteText.yaml
mimeType: text/yaml
fetch:
-
id: siteTextData
location: data/siteText.yaml
mimeType: text/yaml
-
id: wallyTrends
location: cache/fetch/walleye_age0_annual_means.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: walleye_age0_annual_means.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: bassTrends
location: cache/fetch/year_residuals_lmb_cpue_both_seasons.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: year_residuals_lmb_cpue_both_seasons.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: futureSuitability
location: cache/fetch/fish_dominance_categories_by_lake_medians.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: fish_dominance_categories_by_lake_medians.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: futureBassProbs
location: cache/fetch/future_lmb_projected_probability.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: future_lmb_projected_probability.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: futureWallyProbs
location: cache/fetch/future_wae_projected_probability.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: future_wae_projected_probability.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: currentBassProbs
location: cache/fetch/lmb_water_predicted.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: lmb_water_predicted.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: currentWallyProbs
location: cache/fetch/walleye_water_predicted.csv
args:
remoteItemId: 5761775ae4b04f417c2d2f78
remoteFilename: walleye_water_predicted.csv
fetcher: sciencebase
mimeType: text/csv
export: false
-
id: futureGDD
location: data/future_gdd.csv
mimeType: text/csv
process:
-
id: processedWallyTrends
location: cache/process/processedWallyTrends.tsv
depends: wallyTrends
scripts: scripts/process/processWalleyeDecline.R
processor: processWallyTrends
mimeType: text/tab-separated-values
-
id: processedBassTrends
location: cache/process/processedBassTrends.tsv
depends: bassTrends
scripts: scripts/process/processWalleyeDecline.R
processor: processBassTrends
mimeType: text/tab-separated-values
-
id: processedFutureSuitability
location: cache/process/processedFutureSuitability.RDS
depends: futureSuitability
scripts: scripts/process/processFutureSuitability.R
processor: processFutureSuitability
mimeType: RDS
-
id: processedFutureWarming
location: cache/process/processedFutureWarming.tsv
depends: futureGDD
scripts: scripts/process/processFutureWarming.R
processor: processFutureWarming
mimeType: text/tab-separated-values
visualize:
-
id: wallyTrendsFig
location: [figures/wallyTrendsFig-desktop.svg, figures/wallyTrendsFig-mobile.svg]
depends: [processedWallyTrends, processedBassTrends]
scripts: scripts/visualize/visualizeWalleyeDecline.R
visualizer: visualizeWallyDecline
mimeType: image/svg+xml
export: true
-
id: futureSuitabilityFig
location: figures/futureSuitability-desktop.svg
depends: [processedFutureSuitability, siteTextData]
scripts: scripts/visualize/visualizeFutureSuitability.R
visualizer: visualizeFutureSuitability
mimeType: image/svg+xml
export: true
-
id: futureSuitabilityFigArea
location: figures/futureSuitabilityFigArea-desktop.svg
depends: [processedFutureSuitability, siteTextData]
scripts: scripts/visualize/visualizeFutureSuitability.R
visualizer: visualizeFutureSuitability
mimeType: image/svg+xml
export: true
-
id: futureWarmingFig
location: figures/futureWarmingFig-desktop.svg
depends: processedFutureWarming
scripts: scripts/visualize/visualizeFutureWarming.R
visualizer: visualizeFutureWarming
mimeType: image/svg+xml
export: true
-
id: futureClimateFig
location: figures/futureClimate-desktop.svg
#depends: processedClimateScenarios
scripts: scripts/visualize/visualizeClimateScenarios.R
visualizer: visualizeClimateScenarios
mimeType: image/svg+xml
export: true
figures:
-
id: fishGDDFig
type: R
tags: [desktop]
-
id: wallyTrendsFig
type: R
tags: [desktop]
-
id: bassTrendsFig
type: R
tags: [desktop]
-
id: futureSuitabilityFig
type: R
tags: [desktop]
-
id: futureWarmingFig
type: R
tags: [desktop]
-
id: futureClimateFig
type: R
tags: [desktop]