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mpas-framework linking errors with updated Fortran interface of SCORPIO #543

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dqwu opened this issue Sep 19, 2023 · 9 comments
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@dqwu
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dqwu commented Sep 19, 2023

Steps to reproduce on ANL GCE nodes:

git clone https://github.com/E3SM-Project/E3SM.git
cd E3SM

git submodule update --init --recursive

cd externals/scorpio
git checkout scorpio-v1.5.0

cd ../../cime/scripts
./create_test SMS.T62_oQU120_ais20.MPAS_LISIO_TEST --no-run

Build errors:

/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_text':
mpas_io.f90:(.text+0x349f): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_real1d':
mpas_io.f90:(.text+0x3bb5): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x3bfa): undefined reference to `__spio_inq_att_MOD_pio_inq_attlen_file_varid_attname_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_real0d':
mpas_io.f90:(.text+0x4634): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x469e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_int1d':
mpas_io.f90:(.text+0x4d1e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x4d6b): undefined reference to `__spio_inq_att_MOD_pio_inq_attlen_file_varid_attname_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_int0d':
mpas_io.f90:(.text+0x549e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'

Not reproducible with default scorpio 1.4.1 release. Seems to be related to recent mpas-framework code changes.

@jgfouca
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jgfouca commented Sep 19, 2023

Is there something missing in the steps like changing PIO_TYPE? I don't even make it to the MODEL_BUILD phase with that version of scorpio:

/home/jgfouca/E3SM-clean/share/util/shr_pio_mod.F90:2:6:

   use pio
      1
Fatal Error: Can't open module file ‘pio.mod’ for reading at (1): No such file or directory
compilation terminated.

@dqwu
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dqwu commented Sep 19, 2023

@jgfouca Maybe that is another build issue only reproducible on mappy. For now, could you please try Chrysalis or ANL GCE nodes?

@jayeshkrishna
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jayeshkrishna commented Sep 19, 2023

Did the order of linking change in CIME for mpas libraries (specifically ../../mpas-framework/src/libcommon.a ) ?

@jayeshkrishna
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@jayeshkrishna
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So the issue seems to be the linking order for libcommon.a , if its moved (from the end of the link order - the last line in e3sm build log) before libpiof.a the linking issues go away,

python3 /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/Tools/e3sm_compile_wrap.py  /nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/mpich/4.0/gcc-11.1.0/bin/mpif90 CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_diagBGC_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_nlmap_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/t_driver_timers_mod.F90.o -o /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/e3sm.exe  ../atm/libatm.a ../lnd/liblnd.a ../../mpas-framework/src/libice.a ../../mpas-framework/src/libocn.a ../rof/librof.a ../../mpas-framework/src/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a ../../mpas-framework/src/libcommon.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/netcdf/4.8.0c-4.3.1cxx-4.5.3f-parallel/mpich-4.0/gcc-11.1.0/lib -lnetcdff -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/netcdf/4.8.0c-4.3.1cxx-4.5.3f-parallel/mpich-4.0/gcc-11.1.0/lib -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/hdf5/1.12.1/mpich-4.0/gcc-11.1.0/lib -lnetcdf -lhdf5_hl -lhdf5 -lm -ldl -lz -lcurl -lblas -llapack -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/adios2/2.8.3.patch/mpich-4.0/gcc-11.1.0/lib -ladios2_c_mpi -ladios2_c -ladios2_core_mpi -ladios2_core -ladios2_evpath -ladios2_ffs -ladios2_dill -ladios2_atl -ladios2_enet -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/pnetcdf/1.12.2/mpich-4.0/gcc-11.1.0/lib -lpnetcdf -lstdc++ /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libf77blas.so /usr/lib/x86_64-linux-gnu/libatlas.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libf77blas.so /usr/lib/x86_64-linux-gnu/libatlas.so

The original linking error (on anlgce) is in e3sm.bldlog.*,

...
[100%] Linking Fortran executable /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/e3sm.exe
cd /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/cmake-bld/cmake/cpl && /nfs/gce/software/spack/opt/spack/linux-ubuntu20.04-x86_64/gcc-9.3.0/cmake-3.20.5-zyz2eld/bin/cmake -E cmake_link_script CMakeFiles/e3sm.exe.dir/link.txt --verbose=1
python3 /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/Tools/e3sm_compile_wrap.py  /nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/mpich/4.0/gcc-11.1.0/bin/mpif90 CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cime_comp_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cime_driver.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/component_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/component_type_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/cplcomp_exchange_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_glc2lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_lnd2glc_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/map_lnd2rof_irrig_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/mrg_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_aoflux_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_atm_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_glc_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_iac_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_ice_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_lnd_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_ocn_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_rof_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/prep_wav_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_diagBGC_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_diag_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_domain_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_flux_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_frac_mct.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_hist_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_io_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_map_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_map_type_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_nlmap_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/seq_rest_mod.F90.o CMakeFiles/e3sm.exe.dir/scratch/jayesh/E3SM_master/driver-mct/main/t_driver_timers_mod.F90.o -o /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/e3sm.exe  ../atm/libatm.a ../lnd/liblnd.a ../../mpas-framework/src/libice.a ../../mpas-framework/src/libocn.a ../rof/librof.a ../../mpas-framework/src/libglc.a ../wav/libwav.a ../iac/libiac.a ../esp/libesp.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/lib/libcsm_share.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libmct.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libmpeu.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libpiof.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libpioc.a /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/gnu/mpich/nodebug/nothreads/mct/lib/libgptl.a -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/netcdf/4.8.0c-4.3.1cxx-4.5.3f-parallel/mpich-4.0/gcc-11.1.0/lib -lnetcdff -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/netcdf/4.8.0c-4.3.1cxx-4.5.3f-parallel/mpich-4.0/gcc-11.1.0/lib -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/hdf5/1.12.1/mpich-4.0/gcc-11.1.0/lib -lnetcdf -lhdf5_hl -lhdf5 -lm -ldl -lz -lcurl -lblas -llapack -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/adios2/2.8.3.patch/mpich-4.0/gcc-11.1.0/lib -ladios2_c_mpi -ladios2_c -ladios2_core_mpi -ladios2_core -ladios2_evpath -ladios2_ffs -ladios2_dill -ladios2_atl -ladios2_enet -L/nfs/gce/projects/climate/software/linux-ubuntu20.04-x86_64/pnetcdf/1.12.2/mpich-4.0/gcc-11.1.0/lib -lpnetcdf -lstdc++ /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libf77blas.so /usr/lib/x86_64-linux-gnu/libatlas.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libf77blas.so /usr/lib/x86_64-linux-gnu/libatlas.so ../../mpas-framework/src/libcommon.a
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_text':
mpas_io.f90:(.text+0x349f): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_real1d':
mpas_io.f90:(.text+0x3bb5): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x3bfa): undefined reference to `__spio_inq_att_MOD_pio_inq_attlen_file_varid_attname_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_real0d':
mpas_io.f90:(.text+0x4634): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x469e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_int1d':
mpas_io.f90:(.text+0x4d1e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
/usr/bin/ld: mpas_io.f90:(.text+0x4d6b): undefined reference to `__spio_inq_att_MOD_pio_inq_attlen_file_varid_attname_offlen'
/usr/bin/ld: ../../mpas-framework/src/libcommon.a(mpas_io.f90.o): in function `__mpas_io_MOD_mpas_io_get_att_int0d':
mpas_io.f90:(.text+0x549e): undefined reference to `__spio_inq_att_MOD_pio_inq_att_file_vid_offlen'
collect2: error: ld returned 1 exit status
Target /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/e3sm.exe built in 4.501805 seconds
make[2]: *** [cmake/cpl/CMakeFiles/e3sm.exe.dir/build.make:557: /scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/e3sm.exe] Error 1
make[2]: Leaving directory '/scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/cmake-bld'
make[1]: *** [CMakeFiles/Makefile2:632: cmake/cpl/CMakeFiles/e3sm.exe.dir/all] Error 2
make[1]: Leaving directory '/scratch/jayesh/e3sm/scratch/SMS.T62_oQU120_ais20.MPAS_LISIO_TEST.anlgce_gnu.20230919_124230_7z24yi/bld/cmake-bld'
make: *** [Makefile:94: all] Error 2
Command exited with non-zero status 2
real 207.77
user 510.50
sys 100.77

@jgfouca
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jgfouca commented Sep 19, 2023

Thanks, @jayeshkrishna . That should give me the info I need to fix. As a side note, build on chrysalis is incredibly slow. Is there a way to speed it up?

@dqwu
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dqwu commented Sep 19, 2023

@jgfouca I also saw very slow build on Chrysalis. Maybe you can try ANL GCE nodes or some supercomputers. PS, for your mentioned build issue (before MODEL_BUILD) on mappy, have you found the reason?

@dqwu
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dqwu commented Oct 5, 2023

@jayeshkrishna @jgfouca
It seems that this issue has been fixed by E3SM-Project/E3SM#5964

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Fixed by E3SM-Project/E3SM#5964

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