Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Protein ratio term request PMID38412862 #2258

Closed
eks-ebi opened this issue Jul 30, 2024 · 1 comment
Closed

Protein ratio term request PMID38412862 #2258

eks-ebi opened this issue Jul 30, 2024 · 1 comment
Assignees
Labels

Comments

@eks-ebi
Copy link
Collaborator

eks-ebi commented Jul 30, 2024

Preferred term label

See spreadsheet (requestedTrait column): https://docs.google.com/spreadsheets/d/1l2YNI4Ruo-KugvoTOPE-djvoJuxVVee1-Ipxqwa5qhY/edit?usp=sharing

These terms should be created using the ratio pattern. In each case:

  • numerator of the ratio = level of numeratorProtein in blood
  • denominator = level of denominatorProtein in blood

Synonyms

In a handful of cases, the protein names extracted from the paper (numeratorProtein or denominatorProtein columns) are not equal to the official HNGC symbol (numeratorProtein_HGNC_symbol or denominatorProtein_HGNC_symbol columns) - the HGNC symbols could be added as synonyms but I don't think it's essential. Full protein names (e.g. numeratorProtein_HGNC_name column) could also be added as synonyms, but I think with the ratio pattern this might be unwieldy.

Textual definition

The ratio of the amount of numeratorProtein to denominatorProtein in the blood.

Suggested parent term

Maybe there could be a general parent term blood protein amount ratio, or similar?

@ar-ibrahim
Copy link
Collaborator

The new ratio terms have been added to this spreadsheet and will be made available after the upcoming EFO and OBA releases.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

3 participants