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emsoftbench can not open pattern file. #172

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triplucky opened this issue May 25, 2023 · 4 comments
Open

emsoftbench can not open pattern file. #172

triplucky opened this issue May 25, 2023 · 4 comments

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@triplucky
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triplucky commented May 25, 2023

Hello.

I want to do dictionary indexing using EMsoftworkbench.

To use this program, I tried based on the example Ni example file.

But in "6.Dictionary indexing page-average dot product map" tab the following error appear with only blank map.
I choose pattern data file as, Edax_Ni.H5 and choose pattern data set in Scan 6/EBSD/Data/Pattern.

Do I wrong thing?

Also in Windows EMsoftworkbench version, I can reached final page but when I push the generate, but It break up when I clicked "Generate" at "6.Dictionary indexing page", "dictionary indexing" tab.
(In windows version, I can see a map without error)


Copyright (C) 2001-2019 Marc De Graef Research Group/CMU
EMsoft comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under certain conditions; see License.txt file for details.

Program name : EMgetADP.f90
Purpose : Standalone program to compute Average Dot Product map
Platform : Darwin
Source code version : 5_0_0_0
Source code Revision :

Build Date/Time : 2019-10-14 17:42:52Z

See https://github.com/EMsoft-org/EMsoft/wiki for selected help pages.

May 25 2023 2:34:52.556 PM

Number of command line arguments detected:
1

WARNING: USER=Kim
WARNING: file /Users/Kim/.config/EMsoft/EMsoftConfig.json not found
-----> Trying environment variables next ...

WARNING: Unable to find definition for EMtmppathname

WARNING: EMTMPPATHNAME environment variable was NOT defined as a backup.
----> using absolute path convention

Checking for temporary fileEMEBSDDict_tmp.data

Preprocessing experimental patterns
Creating temporary file :EMEBSDDict_tmp.data

Pattern input file /Users/Kim/Documents/EMsoft-5.0.0-OSX/lib/EDAX_Ni.hdf5
input file type TSLHDF

-> Number of threads set to 20

Starting processing of experimental patterns

At line 1268 of file /Users/mjackson/EMsoft-Dev/EMsoftPublic/Source/EMsoftHDFLib/patternmod.f90 (unit = 42)
Fortran runtime error: Cannot open file 'fort.42': Read-only file system

Error termination. Backtrace:

#0 0x10a123579
#1 0x10a124235
#2 0x10a124999

#3 0x10a1e87da

#4 0x10a1eec85
#5 0x100f127ba

#6 0x109cb4f4e
#7 0x100f16a10

#8 0x100c7f698
#9 0x100c7fbc3

#10 0x101019c4e

Average Dot Product Map Generation Complete

@marcdegraef
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marcdegraef commented May 26, 2023 via email

@jwestraadt
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Hello,

WARNING: USER=Kim WARNING: file /Users/Kim/.config/EMsoft/EMsoftConfig.json not found

I think you need to configure EMsoft before using it. Instructions on how to do this can be found here.

Regards,
Johan

@triplucky
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triplucky commented Jun 1, 2023

Thank you for your help. But it's not working still.
error message is changed.

--

Copyright (C) 2001-2019 Marc De Graef Research Group/CMU
EMsoft comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under certain conditions; see License.txt file for details.

Program name : EMgetADP.f90
Purpose : Standalone program to compute Average Dot Product map
Platform : Darwin

Source code version : 5_0_0_0
Source code Revision :

Build Date/Time : 2019-10-14 17:42:52Z

See https://github.com/EMsoft-org/EMsoft/wiki for selected help pages.

Jun 1 2023 7:37:33.976 PM

Number of command line arguments detected: 1

Checking for temporary file/Users/Kim/.config/EMsoft/tmp/EMEBSDDict_tmp.data

Preprocessing experimental patterns

Creating temporary file :/Users/Kim/.config/EMsoft/tmp/EMEBSDDict_tmp.data

Input file /Users/Kim//Applications/EMsoft-5.0.0-OSX/EMsoft-5.0.0-OSX/lib/EDAX-Ni.h5 does not exist in this location ...
Please check the input parameters in the namelist file.

----> Fatal error in routine openExpPatternFile: Unrecoverable error; file not found

STOP Progam ended abnormally

Average Dot Product Map Generation Complete

@marcdegraef
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marcdegraef commented Jun 1, 2023 via email

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