python-package.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Tests

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.6, 3.7, 3.8, 3.9]

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel
          pip install black
          pip install flake8
          pip install pytest
          pip install coverage
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=80 --statistics
      - name: Test with pytest and coverage
        run: |
          coverage run --source=pdbx -m pytest
          coverage report -m | tee coverage.txt
          coverage html
      - name: Upload coverage to https://codecov.io/gh/Electrostatics/mmcif_pdbx
        run: bash <(curl -s https://codecov.io/bash)
      - name: Store coverage text results
        uses: actions/upload-artifact@v2
        with:
          name: coverage-text
          path: coverage.txt
      - name: Store coverage HTML results
        uses: actions/upload-artifact@v2
        with:
          name: coverage-html
          path: htmlcov/*