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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<title>oligor</title>
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<div class="dropdown-menu" aria-labelledby="navbarDropdownMenuLink">
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<header class="masthead">
<div class="container h-100">
<div class="row h-100">
<div class="col-lg-7 my-auto">
<div class="header-content mx-auto">
<h1 class="mb-5">A native (HDX/)-MS data treatment application dedicated to oligonucleotides<br>
<a href="https://oligor.seis.me/">Try it online</a>
</h1>
<a href="https://pubs.acs.org/doi/10.1021/acs.analchem.3c01321" class="btn btn-outline btn-xl js-scroll-trigger">
Read the paper in Analytical Chemistry</a>
<br><br>
<a href="https://pubs.acs.org/doi/10.1021/jacs.3c09365" class="btn btn-outline btn-xl js-scroll-trigger">Learn about HDX/MS for G-quadruplex DNA in JACS</a>
<br><br><br>
<h2 class="mb-5">Process HDX/MS, titration and kinetics experiments<br>
<a class="js-scroll-trigger" href="#features">
View all features
</a></h2>
<a href="https://github.com/EricLarG4/OligoR/" class="btn btn-outline btn-xl js-scroll-trigger">See on Github</a>
</div>
</div>
<div class="col-lg-5 my-auto">
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<img src="media/oligor2.png" class="img-fluid" alt="">
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<div class="button">
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</div>
</div>
</div>
</div>
</header>
<section class="features" id="features">
<div class="container">
<div class="section-heading text-center">
<h2>OligoR features</h2>
<p class="text-muted">An R package for native (HDX-)MS, kinetics and titrations data treatment dedicated to
<span class="gradient-text">
oligonucleotides
</span>
</p>
</div>
<div class="row">
<div class="col-lg-4 my-auto">
<div class="device-container">
<img src="media/oligor2.png" class="img-fluid" alt="">
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<div class="col-lg-6">
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<i class="fab fa-r-project"></i>
<h3>Shiny app</h3>
<p class="text-muted">An interactive application running in RStudio or a web browser, to go from raw data to publication-ready figures. Availble at <a href="https://oligor.seis.me/" class="gradient-text">oligor.seis.me</a></p>
</div>
</div>
<div class="col-lg-6">
<div class="feature-item">
<i class="fas fa-cogs"></i>
<h3>Data treatment</h3>
<p class="text-muted">Experimental and theoretical isotopic distribution comparison, MS file import, scan combine, centroid calculation, intensity standardization, non-linear fitting, and more</p>
</div>
</div>
</div>
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<h3>Custom figures</h3>
<p class="text-muted">Create custom, publication-ready figures</p>
</div>
</div>
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<i class="fas fa-unlock text-primary"></i>
<h3>Open Source</h3>
<p class="text-muted">Software GPL-3 licensed, open MS files (mzML, mzXML) input, export/import processed data in cross-platform formats (.csv, .xlsx), traceability (file names, scan numbers, m/z ranges). Source code on <a href="https://github.com/EricLarG4/OligoR/" class="gradient-text">GitHub</a></p>
</div>
</div>
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</section>
<section class="cta" id="cta">
<div class="cta-content">
<div class="container">
<h2>Get help</h2>
<a href="https://ericlarg4.github.io/OligoR/" class="btn btn-outline btn-xl js-scroll-trigger">Readme</a>
<br><br><br>
<h3><span style="color:white">Learn more about oligonucleotide HDX/MS fundamentals</span></h3>
<br>
<a href="https://pubs.acs.org/doi/10.1021/acs.analchem.9b05298" class="btn btn-outline btn-xl js-scroll-trigger">Anal. Chem. 2020, 92, 6, 4402-4410</a>
</div>
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<h2>Contact</h2>
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<p>© Eric Largy</p>
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