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samplesheet.txt
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Project Cell_Type Genotype Bio_Rep Tech_Rep Seq_Rep Read1 Read2 Sequencing_Directory merged_nodups inter inter30
PROJ CELL WT 1 1 1 sample1_R1.fq.gz sample1_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 2 1 1 sample2_R1.fq.gz sample2_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 3 1 1 sample3_R1.fq.gz sample3_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 4 1 1 sample4_R1.fq.gz sample4_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 1 1 1 sample5_R1.fq.gz sample5_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 2 1 1 sample6_R1.fq.gz sample6_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 3 1 1 sample7_R1.fq.gz sample7_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 4 1 1 sample8_R1.fq.gz sample8_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 1 1 2 sample9_R1.fq.gz sample9_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 2 1 2 sample10_R1.fq.gz sample10_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 3 1 2 sample11_R1.fq.gz sample11_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL WT 4 1 2 sample12_R1.fq.gz sample12_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 1 1 2 sample13_R1.fq.gz sample13_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 2 1 2 sample14_R1.fq.gz sample14_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 3 1 2 sample15_R1.fq.gz sample15_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt
PROJ CELL MUT 4 1 2 sample16_R1.fq.gz sample16_R2.fq.gz /path/to/fastq/directory/ /path/to/merged_nodups.txt.gz /path/to/inter.txt /path/to/inter_30.txt