Dockerfile

### 1. Get Linux
FROM monarchinitiative/ubergraph:1.1

ARG ROBOT=1.9.3
ARG JENA=4.7.0
ARG BGR=1.7
ARG CTD=0.3.0
ARG MAT=0.1

# Configuration options:
# - ${USERNAME} is the name of the non-root user to create.
ARG USERNAME=nru
# - ${USERID} is the UID of the non-root user.
ARG USERID=1001
# - ${DATA} is where the writeable data volume should be mounted.
ARG DATA=/data
# - ${TOOLS} is where the writeable tools volume should be mounted.
ARG TOOLS=/tools

### 2. Get Java and all required system libraries
ENV LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-8

RUN apt-get update
RUN DEBIAN_FRONTEND="noninteractive" apt-get upgrade -y --no-install-recommends
RUN DEBIAN_FRONTEND="noninteractive" apt-get install -y --no-install-recommends \
    software-properties-common \
    build-essential \
    openjdk-11-jdk-headless \
    git \
    make \
    curl \
    tar \
    vim \
    screen \
    rsync \
    locales
RUN locale-gen "en_US.UTF-8"

###### SCALA-CLI ######
RUN curl -fLo scala-cli.deb https://github.com/Virtuslab/scala-cli/releases/latest/download/scala-cli-x86_64-pc-linux.deb \
    && dpkg -i scala-cli.deb

### 3. Set up the $DATA and $TOOLS directory.
RUN mkdir -p ${DATA}
RUN mkdir -p ${TOOLS}

### 4. Set up a non-root user.
RUN useradd --uid ${USERID} -m ${USERNAME}
RUN chown ${USERNAME} ${DATA}
RUN chown ${USERNAME} ${TOOLS}
USER ${USERNAME}

### 5. Install custom tools
WORKDIR $TOOLS

###### JENA ######
RUN curl -O -L http://archive.apache.org/dist/jena/binaries/apache-jena-$JENA.tar.gz \
    && tar -zxf apache-jena-$JENA.tar.gz
ENV PATH "$TOOLS/apache-jena-$JENA/bin:$PATH"

###### BLAZEGRAPH-RUNNER ######
RUN curl -O -L https://github.com/balhoff/blazegraph-runner/releases/download/v$BGR/blazegraph-runner-$BGR.tgz \
    && tar -zxf blazegraph-runner-$BGR.tgz \
    && chmod +x /tools/blazegraph-runner-$BGR
ENV PATH "$TOOLS/blazegraph-runner-$BGR/bin:$PATH"

###### MATERIALIZER ######
RUN curl -O -L https://github.com/balhoff/materializer/releases/download/v$MAT/materializer-$MAT.tgz \
    && tar -zxf materializer-$MAT.tgz \
    && chmod +x /tools/materializer-$MAT
ENV PATH "$TOOLS/materializer-$MAT/bin:$PATH"

###### CTD-TO-OWL ######
RUN curl -O -L https://github.com/balhoff/ctd-to-owl/releases/download/v$CTD/ctd-to-owl-$CTD.tgz \
    && tar -zxf ctd-to-owl-$CTD.tgz \
    && chmod +x /tools/ctd-to-owl-$CTD
ENV PATH "$TOOLS/ctd-to-owl-$CTD/bin:$PATH"

### 6. Start in the $DATA directory.
WORKDIR $DATA