pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>org.sysmo-db</groupId>
	<artifactId>rightfield</artifactId>
	<version>0.26.1</version>
	<packaging>jar</packaging>
	<name>RightField</name>
	<description>
	RightField is an open-source tool for adding ontology term selection to Excel spreadsheets.
	For each annotation field, RightField can specify a range of allowed terms from a chosen ontology (subclasses, individuals or combinations).
	The resulting spreadsheet presents these terms to the users as a simple drop-down list.
	This reduces the adoption barrier for using community ontologies as the annotation is made by the scientist that generated the data rather than a third party, and the annotation is collected at the time of data collection.
	</description>
	<url>http://www.rightfield.org.uk</url>
	<licenses>
		<license>
			<name>New BSD License</name>
			<url>http://www.opensource.org/licenses/bsd-3-clause</url>
		</license>
	</licenses>
	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	</properties>
	<dependencies>

		<dependency>
			<!-- FIXME: skos-api is out of date -->
			<groupId>uk.ac.manchester.cs.skos</groupId>
			<artifactId>skos-api</artifactId>
			<version>3.0.1</version>
		</dependency>
		<dependency>
			<groupId>net.sourceforge.owlapi</groupId>
			<artifactId>owlapi-api</artifactId>
			<version>3.4.10</version>
		</dependency>
		<dependency>
			<groupId>net.sourceforge.owlapi</groupId>
			<artifactId>owlapi-apibinding</artifactId>
			<version>3.4.10</version>
		</dependency>

		<!--  still using patched version, just to clear validation with HSSFSheet -->
		<dependency>
			<groupId>org.sysmo-db</groupId>
			<artifactId>rightfield-poi</artifactId>
			<version>4.1.0</version>
		</dependency>
		
		<!--  poi dependencies -->
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-collections4</artifactId>
			<version>4.3</version>
		</dependency>
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-math3</artifactId>
			<version>3.6.1</version>
		</dependency>
		<dependency>
			<groupId>commons-codec</groupId>
			<artifactId>commons-codec</artifactId>
			<version>1.12</version>
		</dependency>
				
		
		<!--  
		 <dependency>
			<groupId>org.apache.poi</groupId>
			<artifactId>poi</artifactId>
			<version>4.1.0</version>
		 </dependency>
		 --> 
		<dependency>
			<groupId>org.apache.poi</groupId>
			<artifactId>poi-ooxml</artifactId>
			<version>4.1.0</version>
			<exclusions>
				<exclusion>
					<groupId>org.apache.poi</groupId>
					<artifactId>poi</artifactId>
					</exclusion>				
			</exclusions>
		</dependency>			

		<dependency>
			<groupId>org.apache.jena</groupId>
			<artifactId>jena-arq</artifactId>
			<version>3.10.0</version>			
		</dependency>
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>slf4j-simple</artifactId>
			<version>1.7.26</version>
		</dependency>

		<dependency>
			<groupId>dom4j</groupId>
			<artifactId>dom4j</artifactId>
			<version>1.6.1</version>
			<exclusions>
				<exclusion>
					<artifactId>xml-apis</artifactId>
					<groupId>xml-apis</groupId>
				</exclusion>
			</exclusions>
		</dependency>

		<dependency>
			<groupId>net.sf.opencsv</groupId>
			<artifactId>opencsv</artifactId>
			<version>2.3</version>
		</dependency>

		<dependency>
			<groupId>log4j</groupId>
			<artifactId>log4j</artifactId>
			<version>1.2.17</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.13.1</version>
			<scope>test</scope>
		</dependency>

	</dependencies>
	<build>
		<finalName>rightfield-bin</finalName>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.8.0</version>
				<configuration>
					<source>1.8</source>
					<target>1.8</target>
				</configuration>
			</plugin>
			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<finalName>rightfield-${project.version}</finalName>
					<appendAssemblyId>false</appendAssemblyId>
					<descriptors>
						<descriptor>src/main/assembly/assembly.xml</descriptor>
						<descriptor>src/main/assembly/appbundler.xml</descriptor>
					</descriptors>
				</configuration>
				<executions>
					<execution>
						<id>make-assembly</id> <!-- this is used for inheritance merges -->
						<phase>package</phase> <!-- bind to the packaging phase -->
						<goals>
							<goal>single</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jar-plugin</artifactId>
				<version>3.1.1</version>
				<configuration>
					<archive>
						<manifest>
							<addClasspath>true</addClasspath>
							<classpathPrefix>lib</classpathPrefix>
							<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
							<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
							<mainClass>uk.org.rightfield.RightField</mainClass>
						</manifest>
					</archive>
				</configuration>
			</plugin>
		</plugins>
	</build>

	<repositories>
		<repository>
			<id>local-artifacts</id>
			<url>file://${basedir}/local-artifacts</url>
		</repository>
		<repository>
			<id>apache-repo-releases</id>
			<url>https://repository.apache.org/content/repositories/releases/</url>
			<releases>
				<enabled>true</enabled>
			</releases>
		</repository>

	</repositories>
</project>