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The installation libraries incorpored in version 1.3.0 are now officially part of the Tree-of-Life project, the Farseer-NMR project has been upgraded accordingly.
For those users that had installed version 1.3.0, it is now necessary to reinstall from scratch version 1.3.2 because the 1.3.0 updater is not compatible with the new version. We apologize for the inconvinience.
Read more on the new installation routines on the release note of version 1.3.0.
A user has addressed us with a bug in the Extended Bar plots templates where the xticks and xticks_labels were not displaying properly for large proteins.
The current patch corrects that behaviour.
Now, for both horizontal and vertical Extended bar plots, xticks are set to a maximum to avoid tick crowing and label overlap, ticks are then displayed evenly spaced. Therefore, for datasets where a FASTA file was used to identify unassigned residues, tick separation will have a direct relation with the protein length, while if no FASTA is used, tick separation will relate to the number of residues in the reference peaklist.
For Compacted bar plots, ticks are displayed for residues multiples of 10, regardless of how many bars separate the ticks. That is, if no FASTA is used, xticks won't be evenly spaced, while if a FASTA file is used, xticks will nicely display evenly. If the number of xticks is higher than 10, multiples of 100 are used, or 1000, and so forth...
This is an open question for users: How would you like to see ticks represented for very large proteins? Which way fits your work best? Send us your answer to farseer-nmr@googlegroups.com.
Download here the latest version of Farseer-NMR.
Dear All,
We are happy to announce the release of version 1.3.0!
The major upgrade in this version is the introduction of a multiplatform and straightforward installer. To install Farseer-NMR simply run:
python install_farseernmr.py
the installer is UNIX (GNU/Linux and MAC) and Windows compatible and runs on both Python 2.7 and 3.x series.
The creation of this installer was driven by all the feedback obtained during the workshops performed along this first year of 2018. Thank you all for your help and guidance!
Download here the latest version of Farseer-NMR.
Yes, Farseer-NMR can now execute also on Windows machines! It was tested on Windows 10 Pro (thank you Héctor Fuentes); it might have some sporadic bugs here and there though - let's call it a beta version for now - but, hopefully, you will give it a try and help us out spotting those bugs ;-) as our support for Windows machines is still reduced. For GNU/Linux and MAC we give full support!
This new version provides also an updater; now, you can keep Farseer-NMR up to the latest version in one go and independently of any GitHub installation on your computer, simply run the farseer_updater exec file that is created after the installation.
In our Wiki page you will find detailed information on how to download, install, run and update Farseer-NMR! If you are using Farseer-NMR in a Windows machine we advise you to read the how to for Windows, though it is very easy, the execution command is not obvious!
Cheers
The Farseer-NMR Project