Set patterns manually (e.g cell type)

[shambam]

Hi,
I have two data sets I wish to cross compare, but instead of learning N patterns from an experiment what I would like is to set the pattens manually ( say according to cell type) and generate coefficients etc to these.

It isn't entirely obvious to me how this is done (indeed if it can) so any pointers would be appreciated.

[jeanettejohnson]

Use the fixedPatterns parameter!

[LiuCanidk]

Hi，@jeanettejohnson
Could you please tell me where I can use the fixedPatterns parameter?

[jeanettejohnson]

@LiuCanidk,
Please use the setFixedPatterns function, like this:
params <- setFixedPatterns(params, fixedPatterns = fixedPMatrix, whichMatrixFixed = 'P')
or
params <- setFixedPatterns(params, fixedPatterns = fixedAMatrix, whichMatrixFixed = 'A')

[LiuCanidk]

@jeanettejohnson , thanks a lot!