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Add fva_sol and essential_genes params to KBaseFBABuilder.fromCobra #1

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braceal opened this issue Jun 26, 2020 · 0 comments
Open

Add fva_sol and essential_genes params to KBaseFBABuilder.fromCobra #1

braceal opened this issue Jun 26, 2020 · 0 comments

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@braceal
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braceal commented Jun 26, 2020

fva_sol is the object returned by cobra.flux_analysis import flux_variability_analysis

essential_genes is a set containing the id's of the essential genes.

Ones essential genes is added to the builder object. A simple function could be added:

def gene_essential(self, gene_id):
    return gene_id in self.essential_genes
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