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Some problems of Metis partition #1408

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Ron-Wang opened this issue Apr 29, 2021 · 4 comments
Closed

Some problems of Metis partition #1408

Ron-Wang opened this issue Apr 29, 2021 · 4 comments
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type: bug Something isn't working

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@Ron-Wang
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With an external mesh file (.msh file), I use mpirun Geosx. However, it say there in rank 1 doesn't have some regions.
I think it's because the mesh has some many regions (26 regions), and some small regions are not in all partitions (ranks).
I wonder How can I solve this problem? Thanks a lot!

@Ron-Wang Ron-Wang added the new label Apr 29, 2021
@AntoineMazuyer
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Hi @Ron-Wang, can you please communicate the logs of your simulation ? Thanks !

@joshua-white joshua-white added priority: medium type: bug Something isn't working and removed new type: bug Something isn't working labels May 4, 2021
@Ron-Wang
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Ron-Wang commented May 5, 2021

Thanks! @AntoineMazuyer
The logs of my simulation are as follows:
"
***** ERROR
***** LOCATION: /home/jp/GEOSX/GEOSX/src/coreComponents/mesh/CellElementRegion.cpp:51
***** Controlling expression (should be false): source == nullptr
***** Rank 11: Cell block named Region1_TETRA does not exist

** StackTrace of 5 frames **
Frame 0: geosx::ElementRegionManager::GenerateMesh(geosx::dataRepository::Group*)
Frame 1: geosx::ProblemManager::GenerateMesh()
Frame 2: geosx::ProblemManager::ProblemSetup()
Frame 3: main
Frame 4: __libc_start_main
Frame 5: _start

"
I use the tetra element type, and I think some small regions are not in all partitions (ranks) when mpirun. For example, the partition of "Rank 11" doesn't have the "Region1_TETRA".

@wrtobin
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wrtobin commented Nov 3, 2022

Please provide any input files if possible.

Documenting that this may be related to #841 and if/when that is resolved this should be checked.

@TotoGaz TotoGaz changed the title [Bug] Some problems of Metis partition Some problems of Metis partition Jan 12, 2023
@TotoGaz TotoGaz added the type: bug Something isn't working label Jan 12, 2023
@TotoGaz
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TotoGaz commented Feb 10, 2023

The msh format is no more supported since we no more use PAMELA but vtk instead.

@TotoGaz TotoGaz closed this as completed Feb 10, 2023
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