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EBFilter threshold #12

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mkyriak opened this issue Oct 24, 2023 · 0 comments
Open

EBFilter threshold #12

mkyriak opened this issue Oct 24, 2023 · 0 comments

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@mkyriak
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mkyriak commented Oct 24, 2023

Hello,

I have recently started using EBFilter and I haven't used EBCall before.
I am trying to see whether the variant calls using multi-sample mutect2 are true somatic variants for all the samples within the vcf file or not. Since mutect2 cannot genotype the samples, I would like to see if EBFilter can help me distinguish which samples the variants are present.
Do you have any recommended threshold for EBFilter?

Thank you in advance for your time and help!
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