Dockerfile

FROM ubuntu:14.04

# TODO : uninstall build deps and squash using multistage docker builds to make the image lighter

########################################################################
# Basic setup
########################################################################

ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update

# Python
RUN apt-get install -y python python-setuptools python-pip python-dev

########################################################################
# Adaptation of travis apt packages
########################################################################

RUN apt-get install -y build-essential
RUN apt-get install -y libgeos-c1
RUN apt-get install -y libhdf5-serial-dev
RUN apt-get install -y libatlas-base-dev
RUN apt-get install -y gfortran
RUN apt-get install -y libnetcdf-dev
RUN apt-get install -y libblas3gf
RUN apt-get install -y libc6
RUN apt-get install -y libgcc1
RUN apt-get install -y libgfortran3
RUN apt-get install -y liblapack3gf
RUN apt-get install -y libstdc++6
RUN apt-get install -y libgdal1h
RUN apt-get install -y gdal-bin
RUN apt-get install -y libgdal-dev
RUN apt-get install -y python-gdal

########################################################################
# Adaptation of travis install (pip install instead of conda install, pinned to conda's version)
########################################################################

# Additional steps for building python libraries
# for matplotlib
RUN apt-get install -y libfreetype6-dev
# for basemap, as suggested by https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=741242
RUN ln -s /usr/lib/libgeos-3.4.2.so /usr/lib/libgeos.so
# for netcdf4
RUN pip install --upgrade setuptools
# for sqlite (which is not a python package)
RUN apt-get install -y sqlite3 libsqlite3-dev


RUN pip install scipy==1.1.0
RUN pip install matplotlib==2.2.3
RUN pip install https://github.com/matplotlib/basemap/archive/v1.0.7rel.tar.gz # basemap is not in pip
RUN pip install shapely==1.6.4
RUN pip install nose==1.3.7
RUN pip install netcdf4==1.4.1
RUN pip install cftime==1.0.0b1
RUN pip install coverage==4.5.1
RUN pip install coveralls==1.5.0
RUN pip install pycurl==7.43.0.2
RUN pip install pyproj==1.9.5.1
RUN pip install seaborn==0.9.0
RUN pip install simplejson==3.16.0
# sqlite in conda is not a pip package but an apt-get package
RUN apt-get install -y sqlite3 libsqlite3-dev
RUN pip install statsmodels==0.9.0
# libgdal was already installed as an apt-get package
# gdal was already installed as an apt-get package

########################################################################
# Adaptation of travis script
########################################################################

# Additional steps
# missing an additional dep when running tests
RUN apt-get install -y python-tk
# install pypar (for parralelization)
RUN apt-get install -y mpich
RUN pip install https://github.com/daleroberts/pypar/archive/master.zip
# setup.py builds binaries in Utilities, and we need to access this
ENV PYTHONPATH /home/src/Utilities:$PYTHONPATH

# Add the source
ADD . /home/src
WORKDIR /home/src

# Build
RUN python installer/setup.py build_ext -i